From 916b7dca5327adfc1f7ae10fbb4c615cb18f8fb0 Mon Sep 17 00:00:00 2001 From: "Brian J. Knaus" Date: Wed, 7 Feb 2018 16:05:14 -0800 Subject: [PATCH] CRAN 1.7.0 version --- NEWS.md | 2 +- cran-comments.md | 36 ++++++++++++++++++------------------ 2 files changed, 19 insertions(+), 19 deletions(-) diff --git a/NEWS.md b/NEWS.md index 1d486ce6..4895a140 100644 --- a/NEWS.md +++ b/NEWS.md @@ -9,7 +9,7 @@ This may have been addressed at 64a308ba50b9119108e8946737460de5997b805b by addi # vcfR 1.7.0 -Released on CRAN 2018-02-XX. +Released on CRAN 2018-02-07. * `vcf_field_names()` now delimts on KEY= of key/value pairs, allows commas to be used within value. * `read.vcfR()` will download files when provided with a link. * Added example data from the Variant Effect Predictor (vep) `data(vep)`. diff --git a/cran-comments.md b/cran-comments.md index a9db6129..052339aa 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -2,11 +2,11 @@ ## Test environments * local: ubuntu 16.04 LTS, R 3.4.3 -* local: OS X install, R 3.4.2 (binaries for OSX 3.4.3 do not appear available yet) +* local: OS X install, R 3.4.3 * ubuntu 14.04.5 LTS (on travis-ci), R 3.4.2 * Windows Server 2012 R2 x64 (build 9600; on AppVeyor), R version 3.4.3 Patched (2018-02-03 r74215) * winbuilder: R version 3.4.3 (2017-11-30) -* winbuilder: R Under development (unstable) (2017-09-12 r73242) +* winbuilder: R Under development (unstable) (2018-02-01 r74194) ## R CMD check results @@ -18,31 +18,22 @@ There was 1 NOTE: Maintainer: ‘Brian J. Knaus ’ * checking installed package size ... NOTE - installed size is 8.6Mb + installed size is 9.5Mb sub-directories of 1Mb or more: - doc 3.0Mb - libs 5.7Mb - - -There are 4 vignettes (HTML) which contribute to the 2.8Mb in doc. -These could be migrated to a separate documentation package. -This could reduce this package's size. -Because this is a NOTE and not an ERROR or WARNING I have left it as one package for now. + libs 7.8Mb Possibly mis-spelled words in DESCRIPTION: - DNAbin (9:76) - VCF (2:33, 3:68, 4:62, 5:10, 8:58, 10:34) - VcfR (10:5) - genlight (9:66) - genomic (7:51) + DNAbin (9:46) + VCF (2:33, 3:68, 4:62, 5:5, 8:30, 10:5) + VcfR (9:55) + genlight (9:36) I have reviewed these words and feel they are spelled correctly. 'DNAbin' refers to an object of class ape::DNAbin. 'VCF' refers to the variant call format specification, a format of file handled by this package. 'VcfR' refers to this package. 'genlight' refers to an object of class adegenet::genlight. -'genomic' refers to properties of a genome. ## Downstream dependencies @@ -50,8 +41,15 @@ I have reviewed these words and feel they are spelled correctly. I have also run R CMD check on downstream dependencies of vcfR All packages that I could install passed: -* pcadapt: no errors or warnings +devtools::revdep_check() + +Checked annovarR: 1 error | 0 warnings | 0 notes +Checked pcadapt : 0 errors | 0 warnings | 3 notes +The ERROR from annovarR is below, I do not feel this is related to vcfR. + +ERROR: dependencies ‘RMySQL’, ‘AnnotationDbi’ are not available for package ‘annovarR’ +* removing ‘/tmp/Rtmp4bz1PA/R-lib/annovarR’ ## Thank you CRAN Core Team! @@ -59,6 +57,8 @@ All packages that I could install passed: However, I think its polite to thank those who have helped this project. So I've decided to start a list of thanks with the hope that these individuals may see this in the future. +v1.7.0 Thank you Uwe Ligges for processing my submission! + v1.6.0 Thank you Uwe Ligges for processing my submission! v1.5.0 Thank you Kurt Hornik for helping me!