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  1. cumulus cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    WDL 55 30

  2. pegasus pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    Python 81 21

  3. pegasusio pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    Python 7 4

  4. demuxEM demuxEM Public

    Demultiplexing cell/nucleus hashing data for single-cell genomics

    Python 1 2

  5. harmony-pytorch harmony-pytorch Public

    Python 49 9

  6. nmf-torch nmf-torch Public

    Python 10 2

Repositories

Showing 10 of 36 repositories
  • cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    lilab-bcb/cumulus’s past year of commit activity
    WDL 55 BSD-3-Clause 30 13 1 Updated Nov 24, 2024
  • backedarray Public

    Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5

    lilab-bcb/backedarray’s past year of commit activity
    Jupyter Notebook 6 BSD-3-Clause 0 0 1 Updated Oct 7, 2024
  • altocumulus Public

    Command line tool for submitting WDL jobs to Terra or Cromwell server.

    lilab-bcb/altocumulus’s past year of commit activity
    Python 7 BSD-3-Clause 0 3 1 Updated Oct 7, 2024
  • stratocumulus Public

    Backend component of Cumulus for different cloud environments.

    lilab-bcb/stratocumulus’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 1 Updated Oct 7, 2024
  • cirrocumulus Public

    Bring your single-cell data to life

    lilab-bcb/cirrocumulus’s past year of commit activity
    JavaScript 75 BSD-3-Clause 16 11 2 Updated Oct 7, 2024
  • pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    lilab-bcb/pegasusio’s past year of commit activity
    Python 7 BSD-3-Clause 4 1 1 Updated Sep 19, 2024
  • pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    lilab-bcb/pegasus’s past year of commit activity
    Python 81 BSD-3-Clause 21 11 0 Updated Sep 12, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    lilab-bcb/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,309 0 0 Updated Jun 13, 2024
  • demuxEM Public

    Demultiplexing cell/nucleus hashing data for single-cell genomics

    lilab-bcb/demuxEM’s past year of commit activity
    Python 1 BSD-3-Clause 2 3 0 Updated Mar 15, 2024
  • cumulus_feature_barcoding Public
    lilab-bcb/cumulus_feature_barcoding’s past year of commit activity
    C++ 2 BSD-3-Clause 1 0 0 Updated Mar 11, 2024
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