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Hi author,
I tried HiCAssembler, however, there are some errors like:
Scaffolds:['ScaffHiC_424/1', 'ScaffHiC_636/2', 'ScaffHiC_424/2', 'ScaffHiC_564']
DEBUG:HiCAssembler:Removing weak edge in path connecting two hic-scaffolds: edge: ('ScaffHiC_636/2', 'ScaffHiC_424/2'), weight: 52731.08417428207
Traceback (most recent call last):
File "~/miniconda3/envs/hicexplorer_new/bin/assemble", line 312, in <module>
main(args)
File "~/miniconda3/envs/hicexplorer_new/bin/assemble", line 306, in main
super_contigs = assembl.assemble_contigs()
File "~/miniconda3/envs/hicexplorer_new/lib/python3.6/site-packages/hicassembler/HiCAssembler.py", line 210, in assemble_contigs
self.put_back_small_scaffolds()
File "~/miniconda3/envs/hicexplorer_new/lib/python3.6/site-packages/hicassembler/HiCAssembler.py", line 728, in put_back_small_scaffolds
idx_u = path.index(min_edge[0])
ValueError: 'ScaffHiC_636/2' is not in list
What is the solution for this error?
Best
Xiaofei
The text was updated successfully, but these errors were encountered:
Hi author,
I tried HiCAssembler, however, there are some errors like:
What is the solution for this error?
Best
Xiaofei
The text was updated successfully, but these errors were encountered: