IMG 5.3 update - databases

[aclum]

Placeholder ticket for updating

• KEGG db
• KEGG product lookup tables
• Pfam database
• Pfam product lookup tables

Marcel to provide finalized info.

cc @kaijli

[ssarrafan]

Hmm I'll assign this one to you for now @aclum

[aclum]

Natalia is still reviewing the KEGG results so will bump this a sprint.

[aclum]

Pfam will be version v37.0

[aclum]

we should be getting finalized databases, product lookup files and updated last parameters from Marcel this sprint.

[aclum]

database updates-

• Pfam version 37.0
  /global/dna/projectdirs/microbial/omics/databases/Pfam/Pfam-A/37.0

• img-nr
  /global/dna/projectdirs/microbial/omics/databases/IMG-NR/20240916 or /global/dna/projectdirs/microbial/omics/databases/IMG-NR/20240916_partitioned? - getting clarification from Marcel

• product lookup files
  /global/dna/projectdirs/microbial/omics/databases/Product_Name_Mappings/20241202/pfam_lookup_20241202.tsv
  /global/dna/projectdirs/microbial/omics/databases/Product_Name_Mappings/20241202/kegg_lookup_20241202.tsv

software updates-

• LAST
  Update container to use LAST version 1584
  lastal parameter changes? - need info for Marcel
• genomad -being tested in annotation update to 5.3 -genomad #36