From 8f9831bfa058598bf24c4fa0855a89abdd6ee06d Mon Sep 17 00:00:00 2001
From: Michael Thornton <mbthornton@lbl.gov>
Date: Thu, 7 Dec 2023 13:56:13 -0800
Subject: [PATCH] add more missing test fixtures

---
 tests/fixtures/jobs.json                      |  1 +
 tests/fixtures/mags_activity_set.json         | 28 +++++++++++
 .../metagenome_annotation_activity_set.json   | 40 +++++++++++++++
 tests/fixtures/metagenome_assembly_set.json   | 50 +++++++++++++++++++
 4 files changed, 119 insertions(+)
 create mode 100644 tests/fixtures/jobs.json
 create mode 100644 tests/fixtures/mags_activity_set.json
 create mode 100644 tests/fixtures/metagenome_annotation_activity_set.json
 create mode 100644 tests/fixtures/metagenome_assembly_set.json

diff --git a/tests/fixtures/jobs.json b/tests/fixtures/jobs.json
new file mode 100644
index 00000000..fe51488c
--- /dev/null
+++ b/tests/fixtures/jobs.json
@@ -0,0 +1 @@
+[]
diff --git a/tests/fixtures/mags_activity_set.json b/tests/fixtures/mags_activity_set.json
new file mode 100644
index 00000000..3206a520
--- /dev/null
+++ b/tests/fixtures/mags_activity_set.json
@@ -0,0 +1,28 @@
+[
+  {
+    "has_input": [
+      "nmdc:37573bca240f88091720ae61ae5c9452",
+      "nmdc:da186671c5a581af0a7d195bd857c871",
+      "nmdc:4d41794368ed796500bb6d2c82a6787a"
+    ],
+    "part_of": [
+      "nmdc:mga0vx38"
+    ],
+    "git_url": "https://github.com/microbiomedata/mg_annotation/releases/tag/0.1",
+    "has_output": [
+      "nmdc:d41d8cd98f00b204e9800998ecf8427e",
+      "nmdc:38f5521b558377503f6e9a635998dd37",
+      "nmdc:cf96331e23aa34224990105374272877",
+      "nmdc:4d12e1cab7ee7e72ea48151dfc0354c6",
+      "nmdc:52309bf9398a5b0c401e1e23f5e414df",
+      "nmdc:77b1712067645b362aee53aad59000e2"
+    ],
+    "was_informed_by": "nmdc:omprc-11-nhy4pz43",
+    "id": "nmdc:fdefb3fa15098906cf788f5cadf17bb3",
+    "execution_resource": "NERSC-Cori",
+    "name": "MAGs Analysis Activity for nmdc:mga0vx38",
+    "started_at_time": "2021-08-05T14:48:51+00:00",
+    "type": "nmdc:MAGsAnalysisActivity",
+    "ended_at_time": "2021-09-15T10:13:20+00:00"
+  }
+]
diff --git a/tests/fixtures/metagenome_annotation_activity_set.json b/tests/fixtures/metagenome_annotation_activity_set.json
new file mode 100644
index 00000000..44155700
--- /dev/null
+++ b/tests/fixtures/metagenome_annotation_activity_set.json
@@ -0,0 +1,40 @@
+[
+  {
+    "has_input": [
+      "nmdc:37573bca240f88091720ae61ae5c9452"
+    ],
+    "part_of": [
+      "nmdc:mga0vx38"
+    ],
+    "git_url": "https://github.com/microbiomedata/mg_annotation/releases/tag/0.1",
+    "has_output": [
+      "nmdc:7336ecf1f0b47e6161b52aec01d56ab8",
+      "nmdc:62b6efaf7d8a21c60dd6604b04ab4c14",
+      "nmdc:4d41794368ed796500bb6d2c82a6787a",
+      "nmdc:a8e41f5700ab72a4f61f3d1dd45285c8",
+      "nmdc:551a7f35ff12bcd874c84b38c2adbceb",
+      "nmdc:45743fa49c9e798771285daafa4282a8",
+      "nmdc:7059a9060fa1c387109bd687f5185789",
+      "nmdc:ca06b1f1d9661a8bc574be6d9e88ea61",
+      "nmdc:6aa2609c12ebfd17d481772725a4ea10",
+      "nmdc:794ad11fd53f99ab3801227614b4ec3b",
+      "nmdc:de7b26c212d063e5e0d2b47378252d4b",
+      "nmdc:a225e5bf4d6a504b9823636ac9e38224",
+      "nmdc:c2826e164cceee905d5d2878c4c87dfb",
+      "nmdc:225c2a620cc15cfd371f9aa6e0c5208c",
+      "nmdc:36c458d8648ece4e8c3af9b13319b9b8",
+      "nmdc:af9892ee8372ba97bff93424079221d8",
+      "nmdc:02f081900336db5b9553328c93c40d21",
+      "nmdc:5b7a1c3890012eab0fb111979dd6ca3f",
+      "nmdc:205d1c4d44756cdadc7f2263375cd5cc",
+      "nmdc:3c18be56eef0b4cdbc514764cb724f06"
+    ],
+    "was_informed_by": "nmdc:omprc-11-nhy4pz43",
+    "id": "nmdc:fdefb3fa15098906cf788f5cadf17bb3",
+    "execution_resource": "NERSC-Cori",
+    "name": "Annotation Activity for nmdc:mga0vx38",
+    "started_at_time": "2021-08-05T14:48:51+00:00",
+    "type": "nmdc:MetagenomeAnnotationActivity",
+    "ended_at_time": "2021-09-15T10:13:20+00:00"
+  }
+]
diff --git a/tests/fixtures/metagenome_assembly_set.json b/tests/fixtures/metagenome_assembly_set.json
new file mode 100644
index 00000000..30e19d53
--- /dev/null
+++ b/tests/fixtures/metagenome_assembly_set.json
@@ -0,0 +1,50 @@
+[
+  {
+    "has_input": [
+      "nmdc:f107af0a000ec0b90e157fc09473c337"
+    ],
+    "part_of": [
+      "nmdc:mga0vx38"
+    ],
+    "scaf_N50": 302542,
+    "ctg_logsum": 5909271,
+    "ctg_N90": 1315235,
+    "gc_avg": 0.60257,
+    "scaf_N90": 1312362,
+    "scaf_logsum": 5934400,
+    "scaf_pct_gt50K": 1.7355337,
+    "gap_pct": 0.00334,
+    "git_url": "https://github.com/microbiomedata/mg_annotation/releases/tag/0.1",
+    "has_output": [
+      "nmdc:37573bca240f88091720ae61ae5c9452",
+      "nmdc:220c85a9e2d470157aed7a7556f85656",
+      "nmdc:c3298d022868e8b0e7cfb783015b93ed",
+      "nmdc:3fc528f0105fc163876d68df26d35b29",
+      "nmdc:da186671c5a581af0a7d195bd857c871"
+    ],
+    "asm_score": 11.297,
+    "was_informed_by": "nmdc:omprc-11-nhy4pz43",
+    "ctg_powsum": 727370,
+    "scaf_max": 517431,
+    "id": "nmdc:fdefb3fa15098906cf788f5cadf17bb3",
+    "scaf_powsum": 730816,
+    "execution_resource": "NERSC-Cori",
+    "contigs": 1705758,
+    "scaf_n_gt50K": 216,
+    "ctg_N50": 304732,
+    "name": "Assembly Activity for nmdc:mga0vx38",
+    "ctg_max": 517431,
+    "gc_std": 0.06928,
+    "contig_bp": 1168572354,
+    "ctg_L50": 785,
+    "scaf_l_gt50K": 20281644,
+    "scaf_L90": 322,
+    "started_at_time": "2021-08-05T14:48:51+00:00",
+    "ctg_L90": 322,
+    "scaf_bp": 1168611354,
+    "type": "nmdc:MetagenomeAssembly",
+    "scaf_L50": 789,
+    "scaffolds": 1702137,
+    "ended_at_time": "2021-09-15T10:13:20+00:00"
+  }
+]