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Modularize Python API wrapper functions #97

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bmeluch opened this issue Nov 20, 2024 · 0 comments

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bmeluch commented Nov 20, 2024

Currently, the taxonomy and NOM notebooks use functions for interacting with the NMDC API.
The functions exist in https://github.com/microbiomedata/nmdc_notebooks/blob/main/NOM_visualizations/python/nmdc_api.py and https://github.com/microbiomedata/nmdc_notebooks/blob/main/taxonomic_dist_by_soil_layer/python/taxonomic_dist_soil_layer.ipynb, it would be better if they were collected into a module accessible by all Python notebooks in this repo.

Completion criteria:

A Python module exists in this repo including the API functions we have already been using
The existing notebooks use functions from the module
The module works with our requirements.txt (someone newly cloning the repo can get set up easily)

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