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midas-data.owl
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midas-data.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://midasnetwork.us/datasets/midas-data.owl#"
xml:base="http://midasnetwork.us/datasets/midas-data.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:www="http://www.referent-tracking.com/"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:datasets="http://w3id.org/midas-metadata/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:apollo_sv="http://purl.obolibrary.org/obo/apollo_sv.owl/">
<owl:Ontology rdf:about="http://midasnetwork.us/datasets/midas-data.owl">
<owl:versionIRI rdf:resource="http://midasnetwork.us/datasets/v2024-11-11/midas-data.owl"/>
<terms:description>An ontology of midas data types.</terms:description>
<terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license>
<rdfs:comment>Testing automated release process by editing the midas-data-edit.owl file.</rdfs:comment>
<owl:versionInfo>2024-11-11</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
<rdfs:label>editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label>editor preferred term</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<rdfs:label>editor preferred term~editor preferred label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<rdfs:label>example of usage</rdfs:label>
<rdfs:label xml:lang="en">example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
<rdfs:label>has curation status</rdfs:label>
<rdfs:label xml:lang="en">has curation status</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
<rdfs:label>textual definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<rdfs:label>editor note</rdfs:label>
<rdfs:label xml:lang="en">editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
<rdfs:label>definition editor</rdfs:label>
<rdfs:label xml:lang="en">definition editor</rdfs:label>
<rdfs:label>term editor</rdfs:label>
<rdfs:label xml:lang="en">term editor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
<rdfs:label>alternative term</rdfs:label>
<rdfs:label xml:lang="en">alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
<rdfs:label>definition source</rdfs:label>
<rdfs:label xml:lang="en">definition source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
<rdfs:label xml:lang="en">elucidation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/STATO_0000032 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/STATO_0000032">
<rdfs:label xml:lang="en">STATO alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/apollo_sv.owl/APOLLO_SV_0000040">
<rdfs:label xml:lang="en">Unique Apollo Label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator">
<rdfs:label xml:lang="en-us">Creator</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/date -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://purl.org/dc/elements/1.1/type -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type">
<rdfs:label>dc:type</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:label>database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:label>has exact synonym</rdfs:label>
<rdfs:label>has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace">
<rdfs:label>has_obo_namespace</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id">
<rdfs:label>id</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<rdfs:label>in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#source -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#source"/>
<!-- http://www.referent-tracking.com/RTS_00000001 -->
<owl:AnnotationProperty rdf:about="http://www.referent-tracking.com/RTS_00000001"/>
<!-- http://www.referent-tracking.com/RTS_00000002 -->
<owl:AnnotationProperty rdf:about="http://www.referent-tracking.com/RTS_00000002"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<rdf:Description rdf:about="http://www.w3.org/2000/01/rdf-schema#label">
<rdfs:label>label</rdfs:label>
<rdfs:label xml:lang="en">label</rdfs:label>
</rdf:Description>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000047">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000115 xml:lang="en">An action specification giving the number of vaccinations possible in a population during a specific time interval.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">The counts of individuals that could be vaccinated in a population location per time step unit in the absence of any vaccine supply constraints. It represents the capacity of medical system to vaccinate individuals.</obo:IAO_0000600>
<rdfs:label xml:lang="en">vaccination administration capacity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000142 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000142">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A treatment of an individual with antigenic material from a pathogen that has the goal of inducing resistance of the individual to infection with the pathogen.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>Vaccination</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">vaccination</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000159 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000159">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">A census that is the specific outcome of a population demographic survey.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A census that is the specific outcome of a population demographic survey.</obo:IAO_0000600>
<rdfs:label xml:lang="en">population demographic census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000174 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000174">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas15"/>
<obo:IAO_0000115 xml:lang="en">An algorithm that models the progress of a transmissible disease in a population.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An algorithm that models the progress of a transmissible disease in a population.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>disease transmission model</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">disease transmission model</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000237 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000237">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An organism, virus, or prion that can infect another organism.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>pathogen</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">pathogen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000238 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000238">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.</obo:IAO_0000115>
<obo:IAO_0000600 xml:lang="en">An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040 xml:lang="en">host</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">host organism</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000397 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000397">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000115 xml:lang="en">A data set that is a collection of case records.</obo:IAO_0000115>
<obo:IAO_0000117>Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000117>William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A data set that is a collection of case records.</obo:IAO_0000600>
<apollo_sv:APOLLO_SV_0000040>CaseList</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">infection case list</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000542 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000542">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000111 xml:lang="en">population mortality data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.</obo:IAO_0000115>
<obo:IAO_0000117>Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000117>William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.</obo:IAO_0000600>
<rdfs:label xml:lang="en">mortality data</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000591 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000591">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000593"/>
<obo:IAO_0000111 xml:lang="en">climate data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set that is an aggregate of data items that are about an environmental system process (e.g., hydrological precipitation) or a participant in an environmental system process.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Matt Diller</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">climate data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000593 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000593">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000111 xml:lang="en">abiotic ecosystem data set</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set that is about some abiotic ecosystem or abiotic ecosystem element.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">abiotic ecosystem dataset</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">data set about an abiotic ecosystem or abiotic ecosystem element</obo:IAO_0000118>
<obo:IAO_0000600 xml:lang="en">A data set that is about an abiotic ecosystem or some abiotic ecosystem element.</obo:IAO_0000600>
<rdfs:label xml:lang="en">abiotic ecosystem data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000595 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000595">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas21"/>
<obo:IAO_0000111 xml:lang="en">census of treatment facility</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A census that counts the number of treatment facilities of some kind in a particular geographical region.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">census of treatment facilities</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">treatment facilities census</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">treatment facility census</obo:IAO_0000118>
<obo:IAO_0000600 xml:lang="en">A census that counts the number of treatment facilities of some kind in a particular geographical region.</obo:IAO_0000600>
<rdfs:comment xml:lang="en">NOTE: this class counts the facilities themselves, not patients (people) in those facilities. For example, how many hospitals in a state. Not how many patients are in a hospital or hospitals in a state.</rdfs:comment>
<rdfs:label xml:lang="en">treatment facility census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000600 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000600">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000111 xml:lang="en">dataset about hospital stays</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">The datasets at this link are rdf:type this class: https://www.opendataphilly.org/dataset/covid-hospitalizations</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a dataset that is about two or more hospital stays involving two or more patients.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">hospital discharge dataset</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">hospitalization dataset</obo:IAO_0000118>
<rdfs:comment xml:lang="en">The dataset may be limited to stays in one hospital, but hospital discharge datasets as compiled by state departments of health typically contain stays from multiple hospitals (typically every hospital) in the geographical region over which they have jurisdiction</rdfs:comment>
<rdfs:label xml:lang="en">hospital stay dataset</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000602 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000602">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas79"/>
<obo:IAO_0000111 xml:lang="en">human daily movement behavior data set</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">https://www.google.com/covid19/mobility/</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a data set that is about the human daily movement behavior of the individual huamns in a given population.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">human daily movement data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000603 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000603">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas79"/>
<obo:IAO_0000111 xml:lang="en">potentially infectious contact process data set in a population</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a data set that is about one or more potentially infectious contact processes in a population of host organisms.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">contact data set</obo:IAO_0000118>
<rdfs:label xml:lang="en">potentially infectious contact data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000604 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000604">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000111 xml:lang="en">infectious disease control strategy census</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">control strategy census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000605 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000605">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">school closure infectious disease control strategy census</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">an infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">This class represents datasets about strategies for school closure. Datasets about individual actual school closures go elsewhere.</rdfs:comment>
<rdfs:label xml:lang="en">school closure control strategy census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000607 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000607">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">population vaccination census</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">vaccine / immunization registry data, vaccination / immunization records extracted from an EHR</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a population treatment census that is about one or more vaccinations of organisms in a population.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">vaccination census</obo:IAO_0000118>
<rdfs:label xml:lang="en">vaccination administration census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000608 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000608">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000542"/>
<obo:IAO_0000111 xml:lang="en">dataset about excess mortality in a population</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A population mortality dataset that compares deaths in the population during one time interval to deaths in the population during a previous time interval and reports an estimate of how many more or less deaths occurred in the later time interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">Often used during epidemics or pandemics to estimate the death toll.</rdfs:comment>
<rdfs:label xml:lang="en">excess mortality dataset</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000609 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000609">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">census of supplies of vaccine products</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A control strategy inventory census that counts available vaccine doses of one or more similar vaccines.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">vaccine availability</obo:IAO_0000118>
<rdfs:comment xml:lang="en">Motivated my MIDAS coordination center indexing of COVID-19 data, software, etc.
By "similar vaccines" we typically mean same pathogen, but could be similar in other ways (requiring refrigeration of a certain kind).</rdfs:comment>
<rdfs:label xml:lang="en">census of vaccination supplies</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000610 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000610">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">census of facilities that conduct clinical laboratory tests</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A census of facilities that conduct clinical laboratory testing.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">testing availability</obo:IAO_0000118>
<rdfs:comment xml:lang="en">The census might also include information about each facility such as operating hours, address, accessibility, and so on.</rdfs:comment>
<rdfs:label xml:lang="en">laboratory testing facility census</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000613 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000613">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000604"/>
<obo:IAO_0000111 xml:lang="en">laboratory testing capacity action specification</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An action specification giving the number of laboratory tests of a certain type that it is possible to perform in a given population during a specific time interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">laboratory testing capacity</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000614 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000614">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000593"/>
<obo:IAO_0000111 xml:lang="en">data set about Earth's atmospheric weather</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">A data set about the Earth's atmospheric weather</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">weather data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000618 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000618">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">A disease surveillance data set that is about some wastewater disease surveillance.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">sewage surveillance data</obo:IAO_0000118>
<rdfs:label xml:lang="en">wastewater surveillance data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000637 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000637">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas27"/>
<obo:IAO_0000115 xml:lang="en">An intentionality directed at future participation in a vaccination as the recipient of a vaccine or other immunization.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">An intent to be vaccinated in the future.</obo:IAO_0000600>
<rdfs:label xml:lang="en">intent to be vaccinated</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000638 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000638">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas27"/>
<obo:IAO_0000115 xml:lang="en">An intentionality directed at future participation in a vaccination as the administrator of a vaccine or other immunization to an organism with an immune system.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">An intention to give a vaccine to someone or an animal.</obo:IAO_0000600>
<rdfs:label xml:lang="en">intent to vaccinate</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000639 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000639">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000142"/>
<obo:IAO_0000115 xml:lang="en">A vaccination against respiratory syncytial virus via the administration of the monoclonal antibody nirsevimab.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">vaccination with nirsevimab</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000640 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000640">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000607"/>
<obo:IAO_0000115>A count of vaccinations in a population that is the total number of a given type of vaccines administered during a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment>The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic or vaccination campaign, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">cumulative vaccination count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000641 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000641">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000607"/>
<obo:IAO_0000115 xml:lang="en">A count of vaccinations in a population that is the number of a given type of vaccines administered during a proper occurrent part of a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, vaccination campaign, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">incident vaccination count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000642 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000642">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000115 xml:lang="en">A count of infections in a population that is the total number of infections that occur during a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">cumulative infection count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000643 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000643">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000115 xml:lang="en">A count of infections in a population that is the number of infections of a given type that occurred during a proper occurrent part of a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">incident infection count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000644 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000644">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000600"/>
<obo:IAO_0000115 xml:lang="en">A count of hospital stays in a population that is the total number of hospitalizations that occur during a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">cumulative hospitalization count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000645 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000645">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000600"/>
<obo:IAO_0000115 xml:lang="en">A count of hospital stays in a population that is the number of hospital stays that occurred during a proper part of a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">incident hospitalization count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000646 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000646">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000542"/>
<obo:IAO_0000115 xml:lang="en">A count of deaths in a population that is the total number of deaths that occur during a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">cumulative death count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000647 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000647">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000542"/>
<obo:IAO_0000115 xml:lang="en">A count of deaths in a population that is the number of deaths that occurred during a proper part of a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">incident death count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000648 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000648">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000115 xml:lang="en">A count of disease cases that is the total number of individuals who come to meet the criteria of some case definition during a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment>The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">cumulative case count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000649 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000649">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas38"/>
<obo:IAO_0000115 xml:lang="en">A count of cases in a population that is the number of individuals who come to meet the criteria of some case definition during a proper part of a reference temporal interval.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<rdfs:comment xml:lang="en">The interval over which the count is made is typically either one calendar day or one calendar week. The reference interval is usually relative to (i.e., occupied by) a major event like an epidemic, or it is a specific calendar-defined interval like a given calendar year or a set of consecutive "epidemiological weeks" as defined by CDC or another national or subnational public health organization.</rdfs:comment>
<rdfs:label xml:lang="en">incident case count</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000650 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000650">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas27"/>
<obo:IAO_0000111 xml:lang="en">guardian's intent to have a ward under their care vaccinated</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">An intentionality inhering in a person bearing a guardian role and that is directed at their future participation in an authorization for the vaccination or other immunization of a person under their care and who bears a ward role.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">The intent of a guardian to have a ward under their care vaccinated in the near future.</obo:IAO_0000600>
<rdfs:comment xml:lang="en">Legally, this covers the situation of a parent intending to have their child vaccinated. That is because the parent(s) is(are) the natural gaurdian of the child. Other individuals appointed by a court as guardian are legal guardians. If the specific case of parent / child is required, we could create a subclass of this one where the guardian = parent of the ward, and ward = child. However, that could get into issues of adoption, etc. At the current time we do not have guardian role and ward role classes in OMRSE.</rdfs:comment>
<rdfs:label xml:lang="en">intent to have a ward vaccinated</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000652 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000652">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000650"/>
<obo:IAO_0000115 xml:lang="en">An intent to have a ward vaccinated where the guardian is a parent (natural or adoptive) and the ward is a child (natural or adopted) of that parent, and the parent has not otherwise been legally barred from making healthcare decisions for the child.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">Intent to have one's child vaccinated.</obo:IAO_0000600>
<rdfs:comment xml:lang="en">The case of adult children is eliminated through the use of guardian and ward roles in the definition. The parent no longer has a guardian role, and the child no longer has a ward role, once the child is of legal age to make their own decisions. That is, those roles cease to exist.</rdfs:comment>
<rdfs:label xml:lang="en">intent to have a child vaccinated</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CHEBI_60816 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_60816">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>An antigen capable, on its own, of inducing an immune response.</obo:IAO_0000115>
<obo:IAO_0000118 xml:lang="en">immunogenicity</obo:IAO_0000118>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/chebi/213/chebi.owl</obo:IAO_0000412>
<oboInOwl:hasDbXref>PMID:19152635</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PMID:19328011</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PMID:19397283</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>CHEBI:60816</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
<oboInOwl:source>Europe PMC</oboInOwl:source>
<rdfs:label>immunogen</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/CTO_0000220 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CTO_0000220">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>a clinical trial is a medical interventional study where participants are assigned prospectively to an intervention or interventions according to a protocol to evaluate the safety and efficacy of the intervention(s) on biomedical or other health related outcomes. The Interventions include but are not restricted to drugs, cells and other biological products, surgical procedures, radiologic procedures, devices, behavioral treatments, process-of-care changes, preventive care, etc.</obo:IAO_0000115>
<obo:IAO_0000117>Oliver He, Asiyah Yu Lin, Qingliang Li</obo:IAO_0000117>
<obo:IAO_0000118>interventional trial</obo:IAO_0000118>
<obo:IAO_0000119>https://clinicaltrials.gov/ct2/search/map</obo:IAO_0000119>
<obo:IAO_0000119>https://en.wikipedia.org/wiki/Clinical_trial</obo:IAO_0000119>
<obo:IAO_0000119>https://prsinfo.clinicaltrials.gov/definitions.html</obo:IAO_0000119>
<obo:IAO_0000119>https://www.who.int/ictrp/en/</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/cto.owl</obo:IAO_0000412>
<rdfs:label xml:lang="en">clinical trial</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DOID_0080600 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_0080600">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000436"/>
<obo:IAO_0000115>A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/doid/releases/2022-08-29/doid.owl</obo:IAO_0000412>
<oboInOwl:hasDbXref>ICD10CM:U07.1</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D000086382</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCI:C171133</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SNOMEDCT_US_2021_09_01:840539006</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS_CUI:C5203670</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.cdc.gov/coronavirus/2019-ncov/about/index.html</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=32007143</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/pubmed/?term=32007145</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.who.int/emergencies/diseases/novel-coronavirus-2019</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym xml:lang="en">2019 Novel Coronavirus (2019-nCoV)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym xml:lang="en">2019-nCoV infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>COVID19</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>SARS-CoV-2 infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym xml:lang="en">Wuhan coronavirus infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym xml:lang="en">Wuhan seafood market pneumonia virus infection</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>disease_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>DOID:0080600</oboInOwl:id>
<rdfs:label xml:lang="en">COVID-19</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DOID_3292 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_3292">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000436"/>
<obo:IAO_0000115>A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal's blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/doid/releases/2022-08-29/doid.owl</obo:IAO_0000412>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/ECO_0007637"/>
<oboInOwl:hasDbXref>GARD:10722</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ICD10CM:B04</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>ICD9CM:059.01</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MESH:D045908</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCI:C128421</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SNOMEDCT_US_2021_09_01:240466002</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS_CUI:C0276180</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:http://www.cdc.gov/ncidod/monkeypox/factsheet2.htm</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>disease_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>DOID:3292</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#NCIthesaurus"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#zoonotic_infectious_disease"/>
<rdfs:label>mpox</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/DOID_4 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_4">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115>A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.</obo:IAO_0000115>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/doid/releases/2022-08-29/doid.owl</obo:IAO_0000412>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/ECO_0007645"/>
<oboInOwl:hasDbXref>MESH:D004194</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCI:C2991</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SNOMEDCT_US_2021_09_01:64572001</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS_CUI:C0012634</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>url:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041577/</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>disease_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>DOID:4</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#DO_RAD_slim"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/doid#NCIthesaurus"/>
<rdfs:label>disease</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000010">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000111 xml:lang="en">software</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">Software is a plan specification composed of a series of instructions that can be
interpreted by or directly executed by a processing unit.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP: OBI</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl</obo:IAO_0000412>
<rdfs:label xml:lang="en">software</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IAO_0000100 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000100">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas10"/>
<obo:IAO_0000111 xml:lang="en">data set</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type</obo:IAO_0000116>
<obo:IAO_0000116>2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">person:Allyson Lister</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">person:Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000119>OBI_0000042</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">OBI_0000042</obo:IAO_0000119>
<obo:IAO_0000119 xml:lang="en">group:OBI</obo:IAO_0000119>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/apollo_sv/v4.1.1./apollo_sv.owl</obo:IAO_0000412>
<apollo_sv:APOLLO_SV_0000040>dataSets</apollo_sv:APOLLO_SV_0000040>
<rdfs:label xml:lang="en">data set</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000436 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000436">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DOID_4"/>
<obo:IAO_0000115 xml:lang="en">A disease whose physical basis is an infectious disorder.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">tranmissible disease</obo:IAO_0000118>
<obo:IAO_0000412>http://purl.obolibrary.org/obo/ido/2017-11-03/ido.owl</obo:IAO_0000412>
<rdfs:comment>The disposition is realized in an infectious disease course.</rdfs:comment>
<rdfs:label xml:lang="en">infectious disease</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/IDO_0000488 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IDO_0000488">
<rdfs:subClassOf rdf:resource="http://w3id.org/midas-metadata/midas2"/>
<obo:IAO_0000115 xml:lang="en">A quality that inheres in an organism population and is the number of organisms in the population that have antibod
y specific for an infectious agent in their serum at a specified time.</obo:IAO_0000115>
<obo:IAO_0000117>Albert Goldfain</obo:IAO_0000117>
<obo:IAO_0000117>Alexander Diehl</obo:IAO_0000117>
<obo:IAO_0000117>Lindsay Cowell</obo:IAO_0000117>
<rdfs:comment>Prevalence is sometimes defined as a proportion with total population size in the denominator. A particular instance of infectious
agent seroprevalence will depend on a type of infectious agent and a population. Actual measures of seroprevalence are based only on tested individuals and usually specify a geographic location. Other constraints may include population demographics.</rdfs:comment>
<rdfs:label xml:lang="en">infectious agent seroprevalence</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0000989 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0000989">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000436"/>
<rdfs:label>mumps infectious disease</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0001577 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0001577">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000436"/>
<rdfs:label>respiratory syncytial virus infectious disease</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0002282 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0002282">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0100120"/>
<rdfs:label>West Nile fever</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0004619 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0004619">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IDO_0000436"/>
<rdfs:label>measles</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/MONDO_0005136 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/MONDO_0005136">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MONDO_0100120"/>