Fix broken links #208
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| on: | |
| push: | |
| branches: [main, master, v2] | |
| pull_request: | |
| branches: [main, master, v2] | |
| workflow_dispatch: | |
| name: bookdown | |
| jobs: | |
| bookdown: | |
| runs-on: ubuntu-latest | |
| concurrency: | |
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_PAT }} | |
| EMAIL: ${{ secrets.EMAIL }} | |
| steps: | |
| # Checkout repository | |
| - uses: actions/checkout@v4 | |
| # Setup Pandoc | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| # Setup R environment with RSPM enabled | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| # Restore cached package and TinyTeX state files | |
| - name: Cache package state | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| installed_packages.rds | |
| tinytex_packages.rds | |
| key: package-state-${{ runner.os }}-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: package-state-${{ runner.os }}- | |
| # Check and install R packages if needed | |
| - name: Check and Install R Packages | |
| run: | | |
| R -e ' | |
| if (file.exists("installed_packages.rds")) { | |
| saved_pkgs <- readRDS("installed_packages.rds"); | |
| current_pkgs <- installed.packages(); | |
| if (!identical(saved_pkgs[,1], current_pkgs[,1])) { | |
| missing_pkgs <- setdiff(rownames(saved_pkgs), rownames(current_pkgs)); | |
| if (length(missing_pkgs) > 0) install.packages(missing_pkgs); | |
| } else { | |
| cat("No package changes detected.\n"); | |
| } | |
| } else { | |
| install.packages(c("tidyverse", "bookdown")); | |
| }' | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_PAT }} | |
| # Install and cache TinyTeX only if needed | |
| - name: Install TinyTeX if Needed | |
| run: | | |
| if ! command -v tlmgr &> /dev/null; then | |
| R -e 'install.packages("tinytex"); tinytex::install_tinytex()'; | |
| R -e 'tinytex::tlmgr_install(c("xetex", "fontspec", "xunicode", "geometry", "fancyhdr", "titlesec", "titling", "tocloft", "sectsty", "environ", "trimspaces", "wrapfig", "multirow", "colortbl", "tabularx", "varwidth", "footnote", "threeparttable", "enumitem", "footmisc", "fncychap", "hyphenat", "biblatex", "biber"))'; | |
| else | |
| echo "TinyTeX is already installed"; | |
| fi | |
| shell: bash | |
| # Cache TinyTeX installation | |
| - name: Cache TinyTeX installation | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.TinyTeX | |
| key: tinytex-${{ runner.os }}-${{ hashFiles('**/*.tex') }} | |
| restore-keys: tinytex- | |
| # Install fonts only if needed | |
| - name: Check and Install Fonts | |
| run: | | |
| if ! fc-list | grep -q "Inconsolata"; then | |
| sudo apt-get update; | |
| sudo apt-get install -y fonts-inconsolata fonts-nanum; | |
| sudo fc-cache -fv; | |
| else | |
| echo "Fonts are already installed"; | |
| fi | |
| shell: bash | |
| # Setup renv if needed | |
| - uses: r-lib/actions/setup-renv@v2 | |
| # Ensure _bookdown_files directory exists | |
| - name: Ensure _bookdown_files directory exists | |
| run: mkdir -p _bookdown_files | |
| # Cache bookdown results | |
| - name: Cache bookdown results | |
| uses: actions/cache@v4 | |
| with: | |
| path: _bookdown_files | |
| key: bookdown-${{ hashFiles('**/*Rmd') }} | |
| restore-keys: bookdown- | |
| # Check if bookdown::pdf_book is enabled (not commented out) in _output.yml | |
| - name: Check for uncommented pdf_book in _output.yml | |
| id: check_pdf | |
| run: | | |
| if grep -qE '^[^#]*bookdown::pdf_book' _output.yml; then | |
| echo "PDF book is enabled."; | |
| echo "build_pdf=true" >> $GITHUB_ENV; | |
| else | |
| echo "PDF book is not enabled."; | |
| echo "build_pdf=false" >> $GITHUB_ENV; | |
| fi | |
| # Build PDF book if enabled | |
| - name: Build PDF book | |
| if: env.build_pdf == 'true' | |
| run: | | |
| R -e 'bookdown::render_book("index.Rmd", "bookdown::pdf_book")' | |
| # Build HTML books | |
| - name: Build HTML gitbook book | |
| if: (github.ref == 'refs/heads/main' || github.ref == 'refs/heads/master') || github.event_name == 'pull_request' | |
| run: | | |
| R -e 'bookdown::render_book("index.Rmd", "bookdown::gitbook")' | |
| - name: Build HTML bs4_book book | |
| if: github.ref == 'refs/heads/v2' || github.event_name == 'pull_request' | |
| run: | | |
| R -e 'bookdown::render_book("index.Rmd", "bookdown::bs4_book")' | |
| # Save R package state and TinyTeX installation to RDS files | |
| - name: Save R Package and TinyTeX State | |
| run: | | |
| R -e 'saveRDS(installed.packages(), file = "installed_packages.rds")'; | |
| R -e 'tinytex_packages <- tinytex::tl_pkgs(); saveRDS(tinytex_packages, file = "tinytex_packages.rds")' | |
| # Deploy HTML to GitHub Pages if on main or master branch | |
| - name: Deploy to GitHub pages from main/master 🚀 | |
| if: github.event_name != 'pull_request' && (github.ref == 'refs/heads/main' || github.ref == 'refs/heads/master') | |
| uses: JamesIves/[email protected] | |
| with: | |
| branch: gh-pages | |
| folder: docs | |
| clean: false | |
| # Deploy to v2-publish if on v2 branch | |
| - name: Deploy to v2-publish branch from v2 🚀 | |
| if: github.event_name != 'pull_request' && github.ref == 'refs/heads/v2' | |
| uses: JamesIves/[email protected] | |
| with: | |
| branch: v2-publish | |
| folder: docs | |
| clean: false | |
| # Deploy to /v2 subdirectory of gh-pages from v2 branch | |
| - name: Deploy to v2 subdirectory of gh-pages 🚀 | |
| if: github.event_name != 'pull_request' && github.ref == 'refs/heads/v2' | |
| uses: JamesIves/[email protected] | |
| with: | |
| branch: gh-pages | |
| folder: docs | |
| target-folder: v2 # Specify the target subdirectory | |
| clean: false |