From ad0b032974ef8fcf1cde2ada44a739580b83b26a Mon Sep 17 00:00:00 2001 From: Hlib Solodzhuk Date: Mon, 18 Nov 2024 16:55:44 +0200 Subject: [PATCH 1/2] acitivities update --- .../W1D1_Tutorial1.ipynb | 8 ++++---- .../W1D2_Tutorial1.ipynb | 10 +++++----- tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb | 8 ++++---- tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb | 12 ++++++------ tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb | 14 +++++++------- 5 files changed, 26 insertions(+), 26 deletions(-) diff --git a/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb b/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb index 4ac617c2..e4985952 100644 --- a/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb +++ b/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb @@ -306,7 +306,7 @@ "source": [ "### Activity 1: Think About the What and How of Open Science\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "In this activity, reflect on your answers to the questions and discuss them in a group.\n", "\n", @@ -770,7 +770,7 @@ "source": [ "### Activity 2: Self-Reflection on Open Science Concerns\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "In this activity, reflect on the given topic and discuss your thoughts in a group.\n", "\n", @@ -1155,7 +1155,7 @@ "source": [ "### Activity 3: Use, Make, Share\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "Take a moment to answer the following questions on your current research or on research that you would like to do:\n", "\n", @@ -1212,7 +1212,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.20" + "version": "3.11.5" } }, "nbformat": 4, diff --git a/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb b/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb index c6dc430a..279bb3bd 100644 --- a/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb +++ b/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb @@ -273,7 +273,7 @@ "source": [ "#### Activity 1: Find and Resolve a DOI\n", "\n", - "*Estimated time for activity: 5 minutes*\n", + "*Estimated time for activity: 5 minutes. It is an individual activity.*\n", "\n", "In this activity, you will search for a DOI for a data set or piece of software that you use, and you will then use the DOI website to “resolve” the DOI name. By \"resolving\", this means that you will be taken to the information about the product designated by that particular DOI.\n", "\n", @@ -762,7 +762,7 @@ "\n", "#### Activity 2: Explore Zenodo and Sign Up!\n", "\n", - "*Estimated time for activity: 8 minutes*\n", + "*Estimated time for activity: 8 minutes. It is an individual activity.*\n", "\n", "The most popular repository at the moment is Zenodo. Review the following 4.5-minute video to get an overview of Zenodo and then sign up for an account. You can use your ORCID to sign up if you have one.\n", "\n", @@ -1141,7 +1141,7 @@ "\n", "#### Activity 3: Run a Jupyter Notebook Yourself from the Browser\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 15 minutes. It is an individual activity.*\n", "\n", "Let's use an example from Project Pythia to showcase how computational notebooks can be used in science. Project Pythia is an education Hub for the geoscientific community. They have some great learning resources and example research notebooks that are developed and maintained by the community and are freely available.\n", "\n", @@ -1344,7 +1344,7 @@ "\n", "#### Activity 4: Identify an Open-Access Journal\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 7 minutes. It is an individual activity.*\n", "\n", "To become more familiar with the [DOAJ](https://doaj.org/), visit [https://doaj.org/](https://doaj.org/) and search for *Frontiers in Computational Neuroscience* published by the American Astronomical Society. Once you select the journal, you can see costs to publish, details about licensing, author retention rights, time to publication, and other details.\n", "\n", @@ -1518,7 +1518,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.20" + "version": "3.11.5" } }, "nbformat": 4, diff --git a/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb b/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb index 95a738a4..c80e05b1 100644 --- a/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb +++ b/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb @@ -534,7 +534,7 @@ "\n", "#### Activity 1: Discover Data\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "In this activity, visit the links left above to the websites and repositories where open data is located. Find a specific dataset that suits your current research / studies and the one that you might find interesting by itself - it might be your next scientific journey, which will start with this data! Please save the links to the datasets, as you will need to revisit them later in the next activity." ] @@ -789,7 +789,7 @@ "source": [ "#### Activity 2: Following License\n", "\n", - "*Estimated time for activity: 5 minutes*\n", + "*Estimated time for activity: 5 minutes. It is an individual activity.*\n", "\n", "Take a look at the saved datasets from the previous activity and the license for this data. What can you do with the data - are you allowed to use it freely in your research? Can you start your own startup which is based on the model built from this data?" ] @@ -1126,7 +1126,7 @@ "\n", "### Activity 3: Review a data management plan\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 15 minutes. It is a group activity.*\n", "\n", "Take a look at the examples of a public data management plan from [University of North Carolina at Chapel Hill](https://dmptool.org/plans/113336/export.pdf?export%5Bpub%5D=true&export%5Bquestion_headings%5D=true) and from [University of California San Diego](https://library.ucsd.edu/research-and-collections/research-data/_files/dmpsample/DMP-Example-Psych.doc).\n", "\n", @@ -1296,7 +1296,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.20" + "version": "3.11.5" } }, "nbformat": 4, diff --git a/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb b/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb index 2cd15ad6..e7ed87ed 100644 --- a/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb +++ b/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb @@ -482,7 +482,7 @@ "source": [ "#### Activity 1: Find Code For Your Research\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 7 minutes. It is an individual activity.*\n", "\n", "In this activity, you are invited to find open-source code resources that might be beneficial for your current research and/or studies! You can start your searches with something general, such as \"spike sorting\", and then end with more specific to your particular area; who knows, you might find a lab that practices similar research techniques as your own! " ] @@ -1258,7 +1258,7 @@ "\n", "#### Activity 2: Create a DOI for a Test Code File\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "You can create Digital Object Identifiers (DOIs) for your code that makes it citable. You do this by archiving a GitHub code repository at Zenodo and issuing a DOI for the record.\n", "\n", @@ -1274,7 +1274,7 @@ "6. Select any license.\n", "7. Click 'Create repository'.\n", "8. You will be automatically directed to your new repository webpage.\n", - "9. Now, we will get a DOI from the Zenodo application. Note that we are going to use [https://sandbox.zenodo.org/](https://sandbox.zenodo.org/) to do this. This offers all the same capabilities as [https://zenodo.org](https://zenodo.org/) but is a testing site! Create a free account if you have not already.\n", + "9. Now, we will get a DOI from the Zenodo application. Note that we are going to use [https://sandbox.zenodo.org/](https://sandbox.zenodo.org/) to do this. This offers all the same capabilities as [https://zenodo.org](https://zenodo.org/) but is a testing site! You need to sign up for this website even if you have already signed up for Zenodo - they have the separate database of users. **Please sign up with GitHub or with classic registration but not with your ORCID!**\n", "\n", "**Part 2: Create an archived repository and affiliated DOI.**\n", "\n", @@ -1448,7 +1448,7 @@ "source": [ "### Activity 3: Discussing an SMP\n", "\n", - "*Estimated time for activity: 8 minutes*\n", + "*Estimated time for activity: 12 minutes. It is a group activity.*\n", "\n", "In this activity, review the SMP below and think about these questions: \n", "\n", @@ -1527,7 +1527,7 @@ "\n", "#### Activity 4: Browse Through Some of the Communities of Practice\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 6 minutes. It is an individual activity.*\n", "\n", "- Find and browse through the websites associated with two communities of practice listed in the previous section, \"Connect with Communities,\" or explore more of the options if the proposed ones are not of particular interest to you.\n", " \n", @@ -1657,7 +1657,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.20" + "version": "3.11.5" } }, "nbformat": 4, diff --git a/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb b/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb index a9299c68..8a56c726 100644 --- a/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb +++ b/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb @@ -401,11 +401,9 @@ "source": [ "#### Activity 1: Find Results For Your Research\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", - "For this activity, review the proposed scholarly search portals and web portals above and find the relevant studies to your current research interests. In particular, try searching for social media posts and blog posts, which are typically not the first place to look for open results but might benefit you tremendously. Then, evaluate your findings on the matter of reliability\n", - "\n", - "Share your search findings in the group. " + "For this activity, review the proposed scholarly search portals and web portals above and find the relevant studies to your current research interests. In particular, try searching for social media posts and blog posts, which are typically not the first place to look for open results but might benefit you tremendously. Then, evaluate your findings on the matter of reliability." ] }, { @@ -1035,7 +1033,7 @@ "\n", "#### Activity 2: Read the Open Access Policies of Publishers That You Use\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "In this activity, you will learn how to access information about a journal’s data archive policies. The Directory of Open Access Journals (DOAJ) provides an extensive index of open access journals around the globe. The DOAJ can be used to look up information, including data archiving policies, for journals that publish research. Let’s open up this website and look up the policies specific to your most-used journals.\n", "\n", @@ -1067,6 +1065,8 @@ "\n", "8. Review the page and determine which license the journal you selected has defined for reusability for manuscripts.\n", "\n", + "N.B.: Currently, DOAJ hasn't adopted their links to new version of Sherpa Romeo serive, which is now Jisc's open policy finder. Thus, steps 6 to 8 are outdated, but will work in the future. For now, after being redirected to Jisc's website, simply put the journal name in search field once more.\n", + "\n", "This is an example of a site that you can use to determine if a journal’s policy is consistent with how you wish to publish your open access results. Journal policies should always be reviewed and considered during the early planning phase of your project and well before submitting your manuscript for publication." ] }, @@ -1257,7 +1257,7 @@ "\n", "#### Activity 3: Pen to Paper\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "Write a sample results section of an OSDMP that details how you would plan to make your results open. Think about an example from your research and what details you would need to include to convince reviewers that you will share open access results.\n", "\n", @@ -1423,7 +1423,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.20" + "version": "3.11.5" } }, "nbformat": 4, From ebc2e73e38ef090f3ef60103d85c252484b76044 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Mon, 18 Nov 2024 14:59:56 +0000 Subject: [PATCH 2/2] Process tutorial notebooks --- .../W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb | 2 +- .../instructor/W1D1_Tutorial1.ipynb | 6 +++--- .../student/W1D1_Tutorial1.ipynb | 6 +++--- .../W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb | 2 +- .../instructor/W1D2_Tutorial1.ipynb | 8 ++++---- .../student/W1D2_Tutorial1.ipynb | 8 ++++---- tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb | 2 +- .../W1D3_OpenData/instructor/W1D3_Tutorial1.ipynb | 6 +++--- tutorials/W1D3_OpenData/student/W1D3_Tutorial1.ipynb | 6 +++--- tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb | 2 +- .../W1D4_OpenCode/instructor/W1D4_Tutorial1.ipynb | 10 +++++----- tutorials/W1D4_OpenCode/student/W1D4_Tutorial1.ipynb | 10 +++++----- tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb | 2 +- .../W1D5_OpenResults/instructor/W1D5_Tutorial1.ipynb | 12 ++++++------ .../W1D5_OpenResults/student/W1D5_Tutorial1.ipynb | 12 ++++++------ 15 files changed, 47 insertions(+), 47 deletions(-) diff --git a/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb b/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb index e4985952..74c07095 100644 --- a/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb +++ b/tutorials/W1D1_TheEthosOfOpenScience/W1D1_Tutorial1.ipynb @@ -1212,7 +1212,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.5" + "version": "3.9.20" } }, "nbformat": 4, diff --git a/tutorials/W1D1_TheEthosOfOpenScience/instructor/W1D1_Tutorial1.ipynb b/tutorials/W1D1_TheEthosOfOpenScience/instructor/W1D1_Tutorial1.ipynb index 4ac617c2..74c07095 100644 --- a/tutorials/W1D1_TheEthosOfOpenScience/instructor/W1D1_Tutorial1.ipynb +++ b/tutorials/W1D1_TheEthosOfOpenScience/instructor/W1D1_Tutorial1.ipynb @@ -306,7 +306,7 @@ "source": [ "### Activity 1: Think About the What and How of Open Science\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "In this activity, reflect on your answers to the questions and discuss them in a group.\n", "\n", @@ -770,7 +770,7 @@ "source": [ "### Activity 2: Self-Reflection on Open Science Concerns\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "In this activity, reflect on the given topic and discuss your thoughts in a group.\n", "\n", @@ -1155,7 +1155,7 @@ "source": [ "### Activity 3: Use, Make, Share\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "Take a moment to answer the following questions on your current research or on research that you would like to do:\n", "\n", diff --git a/tutorials/W1D1_TheEthosOfOpenScience/student/W1D1_Tutorial1.ipynb b/tutorials/W1D1_TheEthosOfOpenScience/student/W1D1_Tutorial1.ipynb index 4ac617c2..74c07095 100644 --- a/tutorials/W1D1_TheEthosOfOpenScience/student/W1D1_Tutorial1.ipynb +++ b/tutorials/W1D1_TheEthosOfOpenScience/student/W1D1_Tutorial1.ipynb @@ -306,7 +306,7 @@ "source": [ "### Activity 1: Think About the What and How of Open Science\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "In this activity, reflect on your answers to the questions and discuss them in a group.\n", "\n", @@ -770,7 +770,7 @@ "source": [ "### Activity 2: Self-Reflection on Open Science Concerns\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "In this activity, reflect on the given topic and discuss your thoughts in a group.\n", "\n", @@ -1155,7 +1155,7 @@ "source": [ "### Activity 3: Use, Make, Share\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is a group activity.*\n", "\n", "Take a moment to answer the following questions on your current research or on research that you would like to do:\n", "\n", diff --git a/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb b/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb index 279bb3bd..b238cdf9 100644 --- a/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb +++ b/tutorials/W1D2_OpenToolsAndResources/W1D2_Tutorial1.ipynb @@ -1518,7 +1518,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.5" + "version": "3.9.20" } }, "nbformat": 4, diff --git a/tutorials/W1D2_OpenToolsAndResources/instructor/W1D2_Tutorial1.ipynb b/tutorials/W1D2_OpenToolsAndResources/instructor/W1D2_Tutorial1.ipynb index c6dc430a..b238cdf9 100644 --- a/tutorials/W1D2_OpenToolsAndResources/instructor/W1D2_Tutorial1.ipynb +++ b/tutorials/W1D2_OpenToolsAndResources/instructor/W1D2_Tutorial1.ipynb @@ -273,7 +273,7 @@ "source": [ "#### Activity 1: Find and Resolve a DOI\n", "\n", - "*Estimated time for activity: 5 minutes*\n", + "*Estimated time for activity: 5 minutes. It is an individual activity.*\n", "\n", "In this activity, you will search for a DOI for a data set or piece of software that you use, and you will then use the DOI website to “resolve” the DOI name. By \"resolving\", this means that you will be taken to the information about the product designated by that particular DOI.\n", "\n", @@ -762,7 +762,7 @@ "\n", "#### Activity 2: Explore Zenodo and Sign Up!\n", "\n", - "*Estimated time for activity: 8 minutes*\n", + "*Estimated time for activity: 8 minutes. It is an individual activity.*\n", "\n", "The most popular repository at the moment is Zenodo. Review the following 4.5-minute video to get an overview of Zenodo and then sign up for an account. You can use your ORCID to sign up if you have one.\n", "\n", @@ -1141,7 +1141,7 @@ "\n", "#### Activity 3: Run a Jupyter Notebook Yourself from the Browser\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 15 minutes. It is an individual activity.*\n", "\n", "Let's use an example from Project Pythia to showcase how computational notebooks can be used in science. Project Pythia is an education Hub for the geoscientific community. They have some great learning resources and example research notebooks that are developed and maintained by the community and are freely available.\n", "\n", @@ -1344,7 +1344,7 @@ "\n", "#### Activity 4: Identify an Open-Access Journal\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 7 minutes. It is an individual activity.*\n", "\n", "To become more familiar with the [DOAJ](https://doaj.org/), visit [https://doaj.org/](https://doaj.org/) and search for *Frontiers in Computational Neuroscience* published by the American Astronomical Society. Once you select the journal, you can see costs to publish, details about licensing, author retention rights, time to publication, and other details.\n", "\n", diff --git a/tutorials/W1D2_OpenToolsAndResources/student/W1D2_Tutorial1.ipynb b/tutorials/W1D2_OpenToolsAndResources/student/W1D2_Tutorial1.ipynb index c6dc430a..b238cdf9 100644 --- a/tutorials/W1D2_OpenToolsAndResources/student/W1D2_Tutorial1.ipynb +++ b/tutorials/W1D2_OpenToolsAndResources/student/W1D2_Tutorial1.ipynb @@ -273,7 +273,7 @@ "source": [ "#### Activity 1: Find and Resolve a DOI\n", "\n", - "*Estimated time for activity: 5 minutes*\n", + "*Estimated time for activity: 5 minutes. It is an individual activity.*\n", "\n", "In this activity, you will search for a DOI for a data set or piece of software that you use, and you will then use the DOI website to “resolve” the DOI name. By \"resolving\", this means that you will be taken to the information about the product designated by that particular DOI.\n", "\n", @@ -762,7 +762,7 @@ "\n", "#### Activity 2: Explore Zenodo and Sign Up!\n", "\n", - "*Estimated time for activity: 8 minutes*\n", + "*Estimated time for activity: 8 minutes. It is an individual activity.*\n", "\n", "The most popular repository at the moment is Zenodo. Review the following 4.5-minute video to get an overview of Zenodo and then sign up for an account. You can use your ORCID to sign up if you have one.\n", "\n", @@ -1141,7 +1141,7 @@ "\n", "#### Activity 3: Run a Jupyter Notebook Yourself from the Browser\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 15 minutes. It is an individual activity.*\n", "\n", "Let's use an example from Project Pythia to showcase how computational notebooks can be used in science. Project Pythia is an education Hub for the geoscientific community. They have some great learning resources and example research notebooks that are developed and maintained by the community and are freely available.\n", "\n", @@ -1344,7 +1344,7 @@ "\n", "#### Activity 4: Identify an Open-Access Journal\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 7 minutes. It is an individual activity.*\n", "\n", "To become more familiar with the [DOAJ](https://doaj.org/), visit [https://doaj.org/](https://doaj.org/) and search for *Frontiers in Computational Neuroscience* published by the American Astronomical Society. Once you select the journal, you can see costs to publish, details about licensing, author retention rights, time to publication, and other details.\n", "\n", diff --git a/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb b/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb index c80e05b1..cf4aa600 100644 --- a/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb +++ b/tutorials/W1D3_OpenData/W1D3_Tutorial1.ipynb @@ -1296,7 +1296,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.5" + "version": "3.9.20" } }, "nbformat": 4, diff --git a/tutorials/W1D3_OpenData/instructor/W1D3_Tutorial1.ipynb b/tutorials/W1D3_OpenData/instructor/W1D3_Tutorial1.ipynb index 95a738a4..cf4aa600 100644 --- a/tutorials/W1D3_OpenData/instructor/W1D3_Tutorial1.ipynb +++ b/tutorials/W1D3_OpenData/instructor/W1D3_Tutorial1.ipynb @@ -534,7 +534,7 @@ "\n", "#### Activity 1: Discover Data\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "In this activity, visit the links left above to the websites and repositories where open data is located. Find a specific dataset that suits your current research / studies and the one that you might find interesting by itself - it might be your next scientific journey, which will start with this data! Please save the links to the datasets, as you will need to revisit them later in the next activity." ] @@ -789,7 +789,7 @@ "source": [ "#### Activity 2: Following License\n", "\n", - "*Estimated time for activity: 5 minutes*\n", + "*Estimated time for activity: 5 minutes. It is an individual activity.*\n", "\n", "Take a look at the saved datasets from the previous activity and the license for this data. What can you do with the data - are you allowed to use it freely in your research? Can you start your own startup which is based on the model built from this data?" ] @@ -1126,7 +1126,7 @@ "\n", "### Activity 3: Review a data management plan\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 15 minutes. It is a group activity.*\n", "\n", "Take a look at the examples of a public data management plan from [University of North Carolina at Chapel Hill](https://dmptool.org/plans/113336/export.pdf?export%5Bpub%5D=true&export%5Bquestion_headings%5D=true) and from [University of California San Diego](https://library.ucsd.edu/research-and-collections/research-data/_files/dmpsample/DMP-Example-Psych.doc).\n", "\n", diff --git a/tutorials/W1D3_OpenData/student/W1D3_Tutorial1.ipynb b/tutorials/W1D3_OpenData/student/W1D3_Tutorial1.ipynb index 95a738a4..cf4aa600 100644 --- a/tutorials/W1D3_OpenData/student/W1D3_Tutorial1.ipynb +++ b/tutorials/W1D3_OpenData/student/W1D3_Tutorial1.ipynb @@ -534,7 +534,7 @@ "\n", "#### Activity 1: Discover Data\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "In this activity, visit the links left above to the websites and repositories where open data is located. Find a specific dataset that suits your current research / studies and the one that you might find interesting by itself - it might be your next scientific journey, which will start with this data! Please save the links to the datasets, as you will need to revisit them later in the next activity." ] @@ -789,7 +789,7 @@ "source": [ "#### Activity 2: Following License\n", "\n", - "*Estimated time for activity: 5 minutes*\n", + "*Estimated time for activity: 5 minutes. It is an individual activity.*\n", "\n", "Take a look at the saved datasets from the previous activity and the license for this data. What can you do with the data - are you allowed to use it freely in your research? Can you start your own startup which is based on the model built from this data?" ] @@ -1126,7 +1126,7 @@ "\n", "### Activity 3: Review a data management plan\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 15 minutes. It is a group activity.*\n", "\n", "Take a look at the examples of a public data management plan from [University of North Carolina at Chapel Hill](https://dmptool.org/plans/113336/export.pdf?export%5Bpub%5D=true&export%5Bquestion_headings%5D=true) and from [University of California San Diego](https://library.ucsd.edu/research-and-collections/research-data/_files/dmpsample/DMP-Example-Psych.doc).\n", "\n", diff --git a/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb b/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb index e7ed87ed..7c0ca5fb 100644 --- a/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb +++ b/tutorials/W1D4_OpenCode/W1D4_Tutorial1.ipynb @@ -1657,7 +1657,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.5" + "version": "3.9.20" } }, "nbformat": 4, diff --git a/tutorials/W1D4_OpenCode/instructor/W1D4_Tutorial1.ipynb b/tutorials/W1D4_OpenCode/instructor/W1D4_Tutorial1.ipynb index 2cd15ad6..7c0ca5fb 100644 --- a/tutorials/W1D4_OpenCode/instructor/W1D4_Tutorial1.ipynb +++ b/tutorials/W1D4_OpenCode/instructor/W1D4_Tutorial1.ipynb @@ -482,7 +482,7 @@ "source": [ "#### Activity 1: Find Code For Your Research\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 7 minutes. It is an individual activity.*\n", "\n", "In this activity, you are invited to find open-source code resources that might be beneficial for your current research and/or studies! You can start your searches with something general, such as \"spike sorting\", and then end with more specific to your particular area; who knows, you might find a lab that practices similar research techniques as your own! " ] @@ -1258,7 +1258,7 @@ "\n", "#### Activity 2: Create a DOI for a Test Code File\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "You can create Digital Object Identifiers (DOIs) for your code that makes it citable. You do this by archiving a GitHub code repository at Zenodo and issuing a DOI for the record.\n", "\n", @@ -1274,7 +1274,7 @@ "6. Select any license.\n", "7. Click 'Create repository'.\n", "8. You will be automatically directed to your new repository webpage.\n", - "9. Now, we will get a DOI from the Zenodo application. Note that we are going to use [https://sandbox.zenodo.org/](https://sandbox.zenodo.org/) to do this. This offers all the same capabilities as [https://zenodo.org](https://zenodo.org/) but is a testing site! Create a free account if you have not already.\n", + "9. Now, we will get a DOI from the Zenodo application. Note that we are going to use [https://sandbox.zenodo.org/](https://sandbox.zenodo.org/) to do this. This offers all the same capabilities as [https://zenodo.org](https://zenodo.org/) but is a testing site! You need to sign up for this website even if you have already signed up for Zenodo - they have the separate database of users. **Please sign up with GitHub or with classic registration but not with your ORCID!**\n", "\n", "**Part 2: Create an archived repository and affiliated DOI.**\n", "\n", @@ -1448,7 +1448,7 @@ "source": [ "### Activity 3: Discussing an SMP\n", "\n", - "*Estimated time for activity: 8 minutes*\n", + "*Estimated time for activity: 12 minutes. It is a group activity.*\n", "\n", "In this activity, review the SMP below and think about these questions: \n", "\n", @@ -1527,7 +1527,7 @@ "\n", "#### Activity 4: Browse Through Some of the Communities of Practice\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 6 minutes. It is an individual activity.*\n", "\n", "- Find and browse through the websites associated with two communities of practice listed in the previous section, \"Connect with Communities,\" or explore more of the options if the proposed ones are not of particular interest to you.\n", " \n", diff --git a/tutorials/W1D4_OpenCode/student/W1D4_Tutorial1.ipynb b/tutorials/W1D4_OpenCode/student/W1D4_Tutorial1.ipynb index 2cd15ad6..7c0ca5fb 100644 --- a/tutorials/W1D4_OpenCode/student/W1D4_Tutorial1.ipynb +++ b/tutorials/W1D4_OpenCode/student/W1D4_Tutorial1.ipynb @@ -482,7 +482,7 @@ "source": [ "#### Activity 1: Find Code For Your Research\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 7 minutes. It is an individual activity.*\n", "\n", "In this activity, you are invited to find open-source code resources that might be beneficial for your current research and/or studies! You can start your searches with something general, such as \"spike sorting\", and then end with more specific to your particular area; who knows, you might find a lab that practices similar research techniques as your own! " ] @@ -1258,7 +1258,7 @@ "\n", "#### Activity 2: Create a DOI for a Test Code File\n", "\n", - "*Estimated time for activity: 15 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "You can create Digital Object Identifiers (DOIs) for your code that makes it citable. You do this by archiving a GitHub code repository at Zenodo and issuing a DOI for the record.\n", "\n", @@ -1274,7 +1274,7 @@ "6. Select any license.\n", "7. Click 'Create repository'.\n", "8. You will be automatically directed to your new repository webpage.\n", - "9. Now, we will get a DOI from the Zenodo application. Note that we are going to use [https://sandbox.zenodo.org/](https://sandbox.zenodo.org/) to do this. This offers all the same capabilities as [https://zenodo.org](https://zenodo.org/) but is a testing site! Create a free account if you have not already.\n", + "9. Now, we will get a DOI from the Zenodo application. Note that we are going to use [https://sandbox.zenodo.org/](https://sandbox.zenodo.org/) to do this. This offers all the same capabilities as [https://zenodo.org](https://zenodo.org/) but is a testing site! You need to sign up for this website even if you have already signed up for Zenodo - they have the separate database of users. **Please sign up with GitHub or with classic registration but not with your ORCID!**\n", "\n", "**Part 2: Create an archived repository and affiliated DOI.**\n", "\n", @@ -1448,7 +1448,7 @@ "source": [ "### Activity 3: Discussing an SMP\n", "\n", - "*Estimated time for activity: 8 minutes*\n", + "*Estimated time for activity: 12 minutes. It is a group activity.*\n", "\n", "In this activity, review the SMP below and think about these questions: \n", "\n", @@ -1527,7 +1527,7 @@ "\n", "#### Activity 4: Browse Through Some of the Communities of Practice\n", "\n", - "*Estimated time for activity: 7 minutes*\n", + "*Estimated time for activity: 6 minutes. It is an individual activity.*\n", "\n", "- Find and browse through the websites associated with two communities of practice listed in the previous section, \"Connect with Communities,\" or explore more of the options if the proposed ones are not of particular interest to you.\n", " \n", diff --git a/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb b/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb index 8a56c726..5ef01b4a 100644 --- a/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb +++ b/tutorials/W1D5_OpenResults/W1D5_Tutorial1.ipynb @@ -1423,7 +1423,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.5" + "version": "3.9.20" } }, "nbformat": 4, diff --git a/tutorials/W1D5_OpenResults/instructor/W1D5_Tutorial1.ipynb b/tutorials/W1D5_OpenResults/instructor/W1D5_Tutorial1.ipynb index a9299c68..5ef01b4a 100644 --- a/tutorials/W1D5_OpenResults/instructor/W1D5_Tutorial1.ipynb +++ b/tutorials/W1D5_OpenResults/instructor/W1D5_Tutorial1.ipynb @@ -401,11 +401,9 @@ "source": [ "#### Activity 1: Find Results For Your Research\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", - "For this activity, review the proposed scholarly search portals and web portals above and find the relevant studies to your current research interests. In particular, try searching for social media posts and blog posts, which are typically not the first place to look for open results but might benefit you tremendously. Then, evaluate your findings on the matter of reliability\n", - "\n", - "Share your search findings in the group. " + "For this activity, review the proposed scholarly search portals and web portals above and find the relevant studies to your current research interests. In particular, try searching for social media posts and blog posts, which are typically not the first place to look for open results but might benefit you tremendously. Then, evaluate your findings on the matter of reliability." ] }, { @@ -1035,7 +1033,7 @@ "\n", "#### Activity 2: Read the Open Access Policies of Publishers That You Use\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "In this activity, you will learn how to access information about a journal’s data archive policies. The Directory of Open Access Journals (DOAJ) provides an extensive index of open access journals around the globe. The DOAJ can be used to look up information, including data archiving policies, for journals that publish research. Let’s open up this website and look up the policies specific to your most-used journals.\n", "\n", @@ -1067,6 +1065,8 @@ "\n", "8. Review the page and determine which license the journal you selected has defined for reusability for manuscripts.\n", "\n", + "N.B.: Currently, DOAJ hasn't adopted their links to new version of Sherpa Romeo serive, which is now Jisc's open policy finder. Thus, steps 6 to 8 are outdated, but will work in the future. For now, after being redirected to Jisc's website, simply put the journal name in search field once more.\n", + "\n", "This is an example of a site that you can use to determine if a journal’s policy is consistent with how you wish to publish your open access results. Journal policies should always be reviewed and considered during the early planning phase of your project and well before submitting your manuscript for publication." ] }, @@ -1257,7 +1257,7 @@ "\n", "#### Activity 3: Pen to Paper\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "Write a sample results section of an OSDMP that details how you would plan to make your results open. Think about an example from your research and what details you would need to include to convince reviewers that you will share open access results.\n", "\n", diff --git a/tutorials/W1D5_OpenResults/student/W1D5_Tutorial1.ipynb b/tutorials/W1D5_OpenResults/student/W1D5_Tutorial1.ipynb index a9299c68..5ef01b4a 100644 --- a/tutorials/W1D5_OpenResults/student/W1D5_Tutorial1.ipynb +++ b/tutorials/W1D5_OpenResults/student/W1D5_Tutorial1.ipynb @@ -401,11 +401,9 @@ "source": [ "#### Activity 1: Find Results For Your Research\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", - "For this activity, review the proposed scholarly search portals and web portals above and find the relevant studies to your current research interests. In particular, try searching for social media posts and blog posts, which are typically not the first place to look for open results but might benefit you tremendously. Then, evaluate your findings on the matter of reliability\n", - "\n", - "Share your search findings in the group. " + "For this activity, review the proposed scholarly search portals and web portals above and find the relevant studies to your current research interests. In particular, try searching for social media posts and blog posts, which are typically not the first place to look for open results but might benefit you tremendously. Then, evaluate your findings on the matter of reliability." ] }, { @@ -1035,7 +1033,7 @@ "\n", "#### Activity 2: Read the Open Access Policies of Publishers That You Use\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "In this activity, you will learn how to access information about a journal’s data archive policies. The Directory of Open Access Journals (DOAJ) provides an extensive index of open access journals around the globe. The DOAJ can be used to look up information, including data archiving policies, for journals that publish research. Let’s open up this website and look up the policies specific to your most-used journals.\n", "\n", @@ -1067,6 +1065,8 @@ "\n", "8. Review the page and determine which license the journal you selected has defined for reusability for manuscripts.\n", "\n", + "N.B.: Currently, DOAJ hasn't adopted their links to new version of Sherpa Romeo serive, which is now Jisc's open policy finder. Thus, steps 6 to 8 are outdated, but will work in the future. For now, after being redirected to Jisc's website, simply put the journal name in search field once more.\n", + "\n", "This is an example of a site that you can use to determine if a journal’s policy is consistent with how you wish to publish your open access results. Journal policies should always be reviewed and considered during the early planning phase of your project and well before submitting your manuscript for publication." ] }, @@ -1257,7 +1257,7 @@ "\n", "#### Activity 3: Pen to Paper\n", "\n", - "*Estimated time for activity: 10 minutes*\n", + "*Estimated time for activity: 10 minutes. It is an individual activity.*\n", "\n", "Write a sample results section of an OSDMP that details how you would plan to make your results open. Think about an example from your research and what details you would need to include to convince reviewers that you will share open access results.\n", "\n",