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Hello, I'm not sure if I am submitting this correctly but I have been having a similar issue arise in my batch jobs. A singular process will be resubmitted every ~5 minutes but won't seem to make any progress. I have gone through the log files of the process itself and am not finding any errors. The .nextflow.log file is similar to below, repeating in 5 minute intervals for about 2 hours.
~> TaskHandler[id: 66; name: doBreseq (Control_S17); status: RUNNING; exit: -; error: -; workDir: /scicomp/home-pure/ctk0/RefAuth/work/9f/14f6216fdd28fb161d27ef70d9a864]
Mar-28 13:41:24.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 66; name: doBreseq (Control_S17); status: RUNNING; exit: -; error: -; workDir: /scicomp/home-pure/ctk0/RefAuth/work/9f/14f6216fdd28fb161d27ef70d9a864]
Mar-28 13:46:24.145 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
If more info in needed please let me know. This pipeline normally takes around an hour to run but has recently been taking closer to 4 because of this.
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Hello, I'm not sure if I am submitting this correctly but I have been having a similar issue arise in my batch jobs. A singular process will be resubmitted every ~5 minutes but won't seem to make any progress. I have gone through the log files of the process itself and am not finding any errors. The .nextflow.log file is similar to below, repeating in 5 minute intervals for about 2 hours.
~> TaskHandler[id: 66; name: doBreseq (Control_S17); status: RUNNING; exit: -; error: -; workDir: /scicomp/home-pure/ctk0/RefAuth/work/9f/14f6216fdd28fb161d27ef70d9a864]
Mar-28 13:41:24.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
~> TaskHandler[id: 66; name: doBreseq (Control_S17); status: RUNNING; exit: -; error: -; workDir: /scicomp/home-pure/ctk0/RefAuth/work/9f/14f6216fdd28fb161d27ef70d9a864]
Mar-28 13:46:24.145 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below
If more info in needed please let me know. This pipeline normally takes around an hour to run but has recently been taking closer to 4 because of this.
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