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Merge pull request #12855 from edgargabriel/topic/hdf5-testsuite
pr-checks: run hdf5 testsuite
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name: HDF5 | ||
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on: [pull_request] | ||
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jobs: | ||
hdf5-testsuite: | ||
runs-on: ubuntu-22.04 | ||
steps: | ||
- name: Install dependencies | ||
run: | | ||
sudo apt update | ||
sudo apt install -y --no-install-recommends wget | ||
- uses: actions/checkout@v4 | ||
with: | ||
submodules: recursive | ||
- name: Build Open MPI | ||
run: | | ||
./autogen.pl | ||
./configure --prefix=/opt/openmpi --with-pmix=internal --with-prrte=internal --with-hwloc=internal --with-libevent=internal --disable-mpi-fortran --disable-oshmem | ||
make -j 8 && make install | ||
- name: Install HDF5 | ||
run: | | ||
wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz | ||
tar -xzf hdf5.tar.gz | ||
mv hdf5-1* hdf5 | ||
cd hdf5 | ||
export PATH=/opt/openmpi/bin:${PATH} | ||
export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH} | ||
echo ${PATH} | ||
echo ${LD_LIBRARY_PATH} | ||
./configure --enable-parallel | ||
make -j 8 | ||
- name: Tweak MPI | ||
run: | | ||
# Tweak MPI | ||
mca_params="$HOME/.prte/mca-params.conf" | ||
mkdir -p "$(dirname "$mca_params")" | ||
echo rmaps_default_mapping_policy = :oversubscribe >> "$mca_params" | ||
- name: Run testsuite (ompio) | ||
run: | | ||
export PATH=/opt/openmpi/bin:${PATH} | ||
export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH} | ||
HDF5TestExpress=0 mpirun --mca io ompio -np 4 ./hdf5/testpar/t_shapesame | ||
mpirun --mca io ompio -np 4 ./hdf5/testpar/t_filters_parallel | ||
mpirun --mca io ompio -np 4 ./hdf5/testpar/testphdf5 | ||
- name: Run testsuite (romio) | ||
run: | | ||
export PATH=/opt/openmpi/bin:${PATH} | ||
export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH} | ||
HDF5TestExpress=0 mpirun --mca io ^ompio -np 4 ./hdf5/testpar/t_shapesame | ||
mpirun --mca io ^ompio -np 4 ./hdf5/testpar/t_filters_parallel | ||
mpirun --mca io ^ompio -np 4 ./hdf5/testpar/testphdf5 |