deploy: d9999eb2a88debb763cb508e57b36bd2043b86bd #59
Workflow file for this run
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| name: create documentation PR | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| version_tag: | |
| description: | | |
| The branch or tag name when generaing the QMDs. Also used for the name of the PR. | |
| The name of the current branch or tag is used by default | |
| type: string | |
| push: | |
| tags: | |
| - '*' | |
| jobs: | |
| list: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| component_matrix: ${{ steps.set_matrix.outputs.components }} | |
| workflow_matrix: ${{ steps.set_matrix.outputs.workflows }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: viash-io/viash-actions/setup@v5 | |
| - id: ns_list_components | |
| uses: viash-io/viash-actions/ns-list@v5 | |
| with: | |
| platform: docker | |
| format: json | |
| query_namespace: ^(?!workflows) | |
| - id: ns_list_workflows | |
| uses: viash-io/viash-actions/ns-list@v5 | |
| with: | |
| format: json | |
| query_namespace: ^workflows | |
| - id: set_matrix | |
| run: | | |
| echo "components=$(jq -c '[ .[] | | |
| { | |
| "name": .functionality.name, | |
| "namespace_separator": .platforms | map(select(.type == "docker"))[0].namespace_separator, | |
| "namespace": .functionality.namespace, | |
| "config": .info.config, | |
| "dir": .info.config | capture("^(?<dir>.*\/)").dir | |
| } | |
| ]' ${{ steps.ns_list_components.outputs.output_file }} )" >> $GITHUB_OUTPUT | |
| echo "workflows=$(jq -c '[ .[] | | |
| { | |
| "name": $config.functionality.name, | |
| "namespace": $config.functionality.namespace, | |
| "main_script": ((.info.config | capture("^(?<dir>.*\/)").dir) + "/" + (.functionality.test_resources | map(select(.type == "nextflow_script")) | unique | .[].path )), | |
| "config": .info.config, | |
| "entry": .functionality.test_resources | map(select(.type == "nextflow_script")) | .[].entrypoint | |
| } | |
| ]' ${{ steps.ns_list_workflows.outputs.output_file }} )" >> $GITHUB_OUTPUT | |
| push_documentation: | |
| runs-on: ubuntu-latest | |
| needs: [ list ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: openpipelines | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: openpipelines-bio/website | |
| path: website | |
| token: ${{ secrets.GTHB_PAT }} | |
| - uses: viash-io/viash-actions/setup@v5 | |
| - name: Get tag to use | |
| id: get_tag | |
| run: | | |
| INPUT_TAG="${{ github.event.inputs.version_tag }}" | |
| TAG_OR_BRANCH_NAME=${INPUT_TAG:-"${{ github.ref_name }}"} | |
| echo "tag=$TAG_OR_BRANCH_NAME" >> $GITHUB_OUTPUT | |
| - uses: viash-io/viash-actions/pro/generate-documentation-qmd@v5 | |
| with: | |
| project_directory: openpipelines | |
| src: ./ | |
| output_dir: ../website/components/ | |
| dest_path: "{type}s/{namespace}/{name}.qmd" | |
| viash_pro_token: ${{ secrets.GTHB_PAT }} | |
| tools_version: main_build | |
| ref: "${{ steps.get_tag.outputs.tag }}" | |
| - name: Create Pull Request | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GTHB_PAT }} | |
| working-directory: website | |
| run: | | |
| git config user.name github-actions | |
| git config user.email [email protected] | |
| git add . | |
| git checkout -B "release-${{ steps.get_tag.outputs.tag }}" | |
| git commit -m "OpenPipelines release ${{ steps.get_tag.outputs.tag }}" | |
| git push --set-upstream origin "release-${{ steps.get_tag.outputs.tag }}" | |
| gh pr create --title "Openpipeline release ${{ steps.get_tag.outputs.tag }}" --base main --head "release-${{ steps.get_tag.outputs.tag }}" --body "" |