Fix integration tests #889
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DriesSchaumont
requested changes
Oct 18, 2024
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| input:[file(params.resources_test).resolve("10x_5k_anticmv/raw/5k_human_antiCMV_T_TBNK_connect_GEX_1_subset_S1_L001_R1_001.fastq.gz"), | ||
| file(params.resources_test).resolve("10x_5k_anticmv/raw/5k_human_antiCMV_T_TBNK_connect_GEX_1_subset_S1_L001_R2_001.fastq.gz"), | ||
| file(params.resources_test).resolve("10x_5k_anticmv/raw/5k_human_antiCMV_T_TBNK_connect_AB_subset_S2_L004_R1_001.fastq.gz"), | ||
| file(params.resources_test).resolve("10x_5k_anticmv/raw/5k_human_antiCMV_T_TBNK_connect_AB_subset_S2_L004_R2_001.fastq.gz"), | ||
| file(params.resources_test).resolve("10x_5k_anticmv/raw/5k_human_antiCMV_T_TBNK_connect_VDJ_subset_S1_L001_R1_001.fastq.gz"), | ||
| file(params.resources_test).resolve("10x_5k_anticmv/raw/5k_human_antiCMV_T_TBNK_connect_VDJ_subset_S1_L001_R2_001.fastq.gz")], | ||
| gex_reference: file(params.resources_test).resolve("reference_gencodev41_chr1/reference_cellranger.tar.gz"), | ||
| vdj_reference: file(params.resources_test).resolve("10x_5k_anticmv/raw/refdata-cellranger-vdj-GRCh38-alts-ensembl-7.0.0.tar.gz"), | ||
| feature_reference: file(params.resources_test).resolve("10x_5k_anticmv/raw/feature_reference.csv"), |
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Would it be possible to cast to file only once?
DriesSchaumont
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Oct 25, 2024
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DriesSchaumont
requested changes
Nov 12, 2024
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Done! |
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Changelog
params.resources_testso that the location can be updated dynamically. This update only affects the CI.