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Add disk label #906

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Add disk label #906

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29c1b96
add disk labels
rcannood Nov 22, 2024
7d01eba
uniformise ci labels
rcannood Nov 22, 2024
74b0e69
update labels
rcannood Nov 29, 2024
758eea1
Merge branch 'main' into add_disk_label
rcannood Nov 29, 2024
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18 changes: 17 additions & 1 deletion src/workflows/utils/labels.config
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Original file line number Diff line number Diff line change
Expand Up @@ -8,16 +8,32 @@ process {
maxRetries = 3
maxMemory = null

// Resource labels
// CPU resources
withLabel: singlecpu { cpus = 1 }
withLabel: lowcpu { cpus = 4 }
withLabel: midcpu { cpus = 10 }
withLabel: highcpu { cpus = 20 }

// Memory resources
withLabel: lowmem { memory = { get_memory( 4.GB * task.attempt ) } }
withLabel: midmem { memory = { get_memory( 25.GB * task.attempt ) } }
withLabel: highmem { memory = { get_memory( 50.GB * task.attempt ) } }
withLabel: veryhighmem { memory = { get_memory( 75.GB * task.attempt ) } }

// Disk space
withLabel: lowdisk { }
withLabel: middisk { }
withLabel: highdisk { }
withLabel: veryhighdisk { }

// NOTE: The above labels intentionally do not have an effect by default.
// The user should set the disk space requirements by adding the following
// to the compute environment:
//
// withLabel: lowdisk { disk = { 20.GB * task.attempt } }
// withLabel: middisk { disk = { 100.GB * task.attempt } }
// withLabel: highdisk { disk = { 200.GB * task.attempt } }
// withLabel: veryhighdisk { disk = { 500.GB * task.attempt } }
}

def get_memory(to_compare) {
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4 changes: 4 additions & 0 deletions src/workflows/utils/labels_ci.config
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Expand Up @@ -6,6 +6,10 @@ process {
withLabel: highmem { memory = 13.Gb }
withLabel: highcpu { cpus = 4 }
withLabel: veryhighmem { memory = 13.Gb }
withLabel: lowdisk { }
withLabel: middisk { }
withLabel: highdisk { }
withLabel: veryhighdisk { }
}

env.NUMBA_CACHE_DIR = '/tmp'
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