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    18 repositories

    • ScanImageTools

      Public
      MATLAB tools for running imaging experiments with ScanImage
      data-acquisitionmicroscopyscanimage
      MATLAB
      •
      GNU General Public License v3.0
      •3•4•2•0•Updated Dec 17, 2024Dec 17, 2024

    • Khilkevich_Lohse_2024

      Public
      Jupyter Notebook
      •1•2•0•0•Updated Sep 19, 2024Sep 19, 2024

    • analysis_machines_config

      Public
      Notes and script for the Linux analysis machines
      0•0•0•0•Updated May 31, 2024May 31, 2024

    • RegisterStack

      Public
      Affine registration of 3D image stacks
      MATLAB
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Mar 9, 2023Mar 9, 2023

    • bg-gitbook

      Public
      Mirror of the brainglobe GitBook page
      4•0•0•0•Updated Jan 6, 2023Jan 6, 2023

    • bench_optics

      Public
      Basic bench optics exercises
      TeX
      •3•1•9•0•Updated Oct 4, 2022Oct 4, 2022

    • neuroconv

      Public
      Extract metadata from Bonsai outputs
      Python
      •
      Other
      •3•0•0•0•Updated Jan 11, 2022Jan 11, 2022

    • rt_model_orsolic

      Public
      Python
      •
      MIT License
      •2•4•0•0•Updated Dec 17, 2020Dec 17, 2020

    • LaserControl

      Public
      MATLAB control classes for lasers
      hardwaremicroscopy2-photonaomlasermatlab
      MATLAB
      •
      GNU General Public License v3.0
      •1•4•5•0•Updated Sep 2, 2020Sep 2, 2020

    • ast_model

      Public
      Asymmetric Student-t model for neuropil decontamination
      MATLAB
      •
      MIT License
      •2•1•0•0•Updated Jul 5, 2019Jul 5, 2019

    • HanSingleCell

      Public
      Analysis code specific to Han et al.
      MATLAB
      •1•1•0•0•Updated Feb 15, 2019Feb 15, 2019

    • plugin-GUI

      Public
      Open Ephys GUI with plugin architecture
      C++
      •684•0•0•0•Updated Apr 3, 2018Apr 3, 2018

    • beamAligner

      Public
      MATLAB tool for aligning mesoscope beam.
      MATLAB
      •1•0•0•0•Updated Nov 3, 2017Nov 3, 2017

    • MesoscopeLoader

      Public
      Basic tools to load mesoscope stacks in Matlab
      microscopyimagingmatlab
      MATLAB
      •0•0•0•0•Updated Sep 25, 2017Sep 25, 2017

    • MotionControl

      Public
      Classes to control lab actuators and other similar devices using MATLAB
      hardwarematlabneurosciencemicroscopymotion-control
      MATLAB
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jun 13, 2017Jun 13, 2017

    • basic_Ca_Imaging_Analysis

      Public
      Basic introduction to Ca++ imaging analysis in MATLAB for complete beginners
      MATLAB
      •0•3•3•0•Updated May 19, 2017May 19, 2017

    • basic_matlab

      Public
      Basic MATLAB introduction for complete beginners
      TeX
      •0•0•3•0•Updated May 17, 2017May 17, 2017

    • gitparable

      Public
      GIT introductory presentation using the GIT parable
      TeX
      •0•0•0•0•Updated May 13, 2016May 13, 2016