Repositories list

• MICA-7t

  Public
  scripts for 7t sorting and organizing

  Shell

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Dec 21, 2024Dec 21, 2024

• z-brains

  Public
  z-brains: open software for brain lesion lateralization and localization

  mrineuroimagingepilepsy+ 3lesionlateralizationze-brain

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•10•2•0•Updated Dec 13, 2024Dec 13, 2024

• micapipe

  Public
  micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

  awesomemrineuroimaging+ 7imageprocessingbidsmicrostructurediffusion-mriconnectomeresting-statemultimodal

  Shell

  •

  GNU General Public License v3.0

  •31•91•32•5•Updated Dec 13, 2024Dec 13, 2024

• BrainSpace

  Public
  BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •75•192•5•3•Updated Dec 10, 2024Dec 10, 2024

• hippomaps

  Public
  Toolbox and data repository for hippocampal surface data

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated Dec 4, 2024Dec 4, 2024

• micaopen

  Public
  Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

  machine-learningneuroscienceneuroimaging+ 6networksgradientsconnectomicshistologymultimodalmulti-scale

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •40•73•1•2•Updated Nov 27, 2024Nov 27, 2024

• mk6240_pet-tau_Healthy

  Public
  Data collection and organization of the PET-TAU tracer mk6240 in Healthy population from the Montreal Neurological Institute (The Neuro) MICA lab.

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• MICA-MNI.github.io

  Public
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Oct 9, 2024Oct 9, 2024

• BrainStat

  Public
  A statistics and context decoding toolbox for neuroimaging.

  pythonstatisticsmatlab+ 1neuroimaging

  Jupyter Notebook

  •

  Other

  •23•98•8•0•Updated Sep 27, 2024Sep 27, 2024

• AllenMouse

  Public
  Expression of genes in hippocampis

  Jupyter Notebook

  •0•0•0•0•Updated May 7, 2024May 7, 2024

• ENIGMA

  Public
  The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

  visualizationopen-sourceawesome+ 10multisiteanalysismrienigmaneuroimagingconnectomicsworkflows+ 3

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •32•133•9•2•Updated Apr 11, 2024Apr 11, 2024

• Hippo_Spin_Testing

  Public
  Spin testing implemented in the hippocampus using HippUnfold

  Jupyter Notebook

  •2•0•0•0•Updated Nov 6, 2023Nov 6, 2023

• MICs_tasks

  Public
  Workflow for tasks, from raw files to bids tsv

  R

  •0•0•0•0•Updated Jun 22, 2023Jun 22, 2023

• micapipe-supplementary

  Public
  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jun 15, 2023Jun 15, 2023

• bibliography

  Public
  MICA Bibliography

  TeX

  •

  The Unlicense

  •0•0•0•0•Updated Dec 17, 2021Dec 17, 2021

• 7T-battery

  Public
  7T ‘precision imaging' plan

  Python

  •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

• NeuroimagingDataScience

  Public
  Neuroimaging Data Science Class NEUR 608

  HTML

  •1•2•0•0•Updated Aug 17, 2020Aug 17, 2020

• surfstat

  Public
  HTML

  •1•0•0•0•Updated Apr 10, 2019Apr 10, 2019

• autism-workshop-2019.github.io

  Public
  CSS

  •0•0•0•0•Updated Dec 14, 2018Dec 14, 2018

• CBIG

  Public
  MATLAB

  •

  MIT License

  •390•0•0•0•Updated Sep 12, 2018Sep 12, 2018

• Presentations

  Public
  1•1•0•0•Updated Jun 12, 2018Jun 12, 2018