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@o2r-project Opening Reproducible Research

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    52 repositories

    • geoextent

      Public
      Python library for extrating geospatial extent of files and directories with multiple data formats
      Jupyter Notebook
      •
      MIT License
      •4•1•50•3•Updated Dec 6, 2023Dec 6, 2023

    • o2r-project.github.io

      Public
      Website of the research project "Opening Reproducible Research"
      JavaScript
      •
      Creative Commons Attribution 4.0 International
      •14•3•3•0•Updated Sep 18, 2023Sep 18, 2023

    • o2r-UI

      Public
      User interface for creating and examining Executable Research Compendia (ERC)
      reproducible-research
      HTML
      •
      Apache License 2.0
      •5•3•39•6•Updated Mar 5, 2023Mar 5, 2023

    • nbo2rproxy

      Public
      JavaScript
      •
      ISC License
      •0•0•0•3•Updated Mar 3, 2023Mar 3, 2023

    • o2r-informer

      Public
      ⚠️ Project discontinued ⚠️ Funcions now integrated in o2r-project/o2r-muncher
      JavaScript
      •
      Apache License 2.0
      •0•0•0•4•Updated Feb 1, 2023Feb 1, 2023

    • o2r-bouncer

      Public
      Node.js implementation for the oauth2-authentification process of the o2r web api
      microserviceorcidoauth
      JavaScript
      •
      Apache License 2.0
      •2•1•5•12•Updated Dec 30, 2022Dec 30, 2022

    • erc-checker

      Public
      JavaScript library and CLI tool for ERC validation and comparison result checking
      HTML
      •
      Apache License 2.0
      •4•0•14•8•Updated Dec 30, 2022Dec 30, 2022

    • o2r-guestlister

      Public
      An OAuth server implementation to allow offline login with o2r-bouncer
      JavaScript
      •
      Apache License 2.0
      •2•0•2•11•Updated Dec 10, 2022Dec 10, 2022

    • o2r-muncher

      Public
      Node.js implementation of the ERC execution and job control part of the o2r web API
      microserviceercdockercompendia
      HTML
      •
      Apache License 2.0
      •7•2•43•14•Updated Dec 10, 2022Dec 10, 2022

    • erc-spec

      Public
      Executable Research Compendium specification and guides
      Creative Commons Zero v1.0 Universal
      •5•7•44•0•Updated Nov 10, 2022Nov 10, 2022

    • api

      Public
      Reproducibility service RESTful web API specification and documentation
      Makefile
      •
      Other
      •8•3•13•1•Updated Aug 23, 2022Aug 23, 2022

    • o2r-meta

      Public
      Metadata toolsuite for an extract-map-validate workflow supporting reproducible research
      HTML
      •
      Apache License 2.0
      •3•2•13•0•Updated Jul 19, 2022Jul 19, 2022

    • ojs-erc-plugin

      Public
      A plugin to publish Executable Research Compendia on OJS
      PHP
      •
      GNU General Public License v3.0
      •2•0•20•0•Updated Apr 4, 2022Apr 4, 2022

    • containerit

      Public
      Package an R workspace and all dependencies as a Docker container
      dockerdockerfilerreproducible-researchreproducible-science
      R
      •
      GNU General Public License v3.0
      •29•290•84•2•Updated Feb 17, 2022Feb 17, 2022

    • ansible

      Public
      Ansible configuration to deploy o2r reference implementation
      Jinja
      •
      Apache License 2.0
      •1•1•2•0•Updated Nov 16, 2021Nov 16, 2021

    • reference-implementation

      Public
      A catch-all repository to run all o2r microservices and the user interface platform
      Makefile
      •
      Apache License 2.0
      •4•4•1•0•Updated Jul 27, 2021Jul 27, 2021

    • o2r-shipper

      Public
      Export research compendia to repositories and archives
      microservicebagzenodo
      Python
      •
      Apache License 2.0
      •3•0•6•0•Updated Jul 14, 2021Jul 14, 2021

    • architecture

      Public
      Architecture and overarching documentation for o2r microservices
      reproducible-researchreproducible-scienceercreproducible-experiments
      Makefile
      •
      Creative Commons Zero v1.0 Universal
      •4•11•4•0•Updated Jul 1, 2021Jul 1, 2021

    • reviewpaper

      Public
      Publishing computational research - A review of infrastructures for reproducible and transparent scholarly communication
      HTML
      •
      Other
      •2•0•0•0•Updated May 17, 2021May 17, 2021

    • o2r-loader

      Public archive
      Functionality integrated in o2r-muncher
      microserviceowncloudsciebo
      HTML
      •
      Apache License 2.0
      •3•0•0•0•Updated Apr 21, 2021Apr 21, 2021

    • geoOJS

      Public
      A novel approach to integrate well-defined geospatial metadata in the OJS scholar publishing platform to enhance discovery of scientific articles.
      JavaScript
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Feb 18, 2021Feb 18, 2021

    • o2r-substituter

      Public archive
      Create a new compendium based on existing compendia
      microservice
      HTML
      •
      Apache License 2.0
      •2•1•0•4•Updated Oct 7, 2020Oct 7, 2020

    • erc-examples

      Public
      Examples for Executable Research Compendia and compatible workspaces
      reproducible-researchreproducible-sciencereproducibilityercreproducible-experimentso2r
      HTML
      •1•1•5•0•Updated Aug 19, 2020Aug 19, 2020

    • studies

      Public
      evaluations and (user) studies
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 6, 2020Jul 6, 2020

    • publishing-utopia

      Public
      A proposed GenR theme (Nov 2019)
      3•0•0•0•Updated May 18, 2020May 18, 2020

    • Review_Analyses

      Public
      Analyses of open reviews regarding supplemental material
      0•0•0•0•Updated Mar 25, 2020Mar 25, 2020

    • o2r-transporter

      Public archive
      ⚠️ Project discontinued ⚠️ See https://github.com/o2r-project/o2r-muncher
      microservice
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Mar 18, 2020Mar 18, 2020

    • o2r-platform

      Public archive
      ⚠️ Project discontinued ⚠️ See https://github.com/o2r-project/o2r-UI
      JavaScript
      •
      Apache License 2.0
      •8•2•40•0•Updated Mar 17, 2020Mar 17, 2020

    • repo2docker

      Public
      Turn git repositories into Jupyter enabled Docker Images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •362•0•0•0•Updated Mar 12, 2020Mar 12, 2020

    • ojs

      Public
      Open Journal Systems
      PHP
      •917•0•0•0•Updated Feb 21, 2020Feb 21, 2020