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_quarto.yml
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_quarto.yml
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project:
type: website
output-dir: _site
execute:
freeze: true # never re-execute computational content during project render, needed for .qmd and .rmd since quarto does not render .ipynb by default
website:
page-navigation: true
title: "PO.DAAC Cookbook"
site-url: "https://podaac.github.io/tutorials/"
repo-url: https://github.com/podaac/tutorials
repo-actions: [issue] #wanted to add edit & source, but since our repo has a "master" branch instead of a "main" branch, edit & source will not work.
page-footer:
right: "This page is built with [Quarto](https://quarto.org/)."
left: "© PO.DAAC, 2022"
sidebar:
logo: "images/podaac-logo.png"
pinned: true
align: center
tools:
- icon: globe
href: https://podaac.jpl.nasa.gov/
text: "PO.DAAC Website"
- icon: github
href: https://github.com/podaac/tutorials
text: "Github Repository"
style: "docked"
search: true
collapse-level: 1
contents:
- href: index.qmd
text: "Welcome"
- text: "Cheatsheets & Guides"
href: quarto_text/cheatsheet.qmd
- section: quarto_text/HowTo.qmd
contents:
- section: "Find Data"
contents:
- text: "using Earthdata Search"
href: external/earthdata_search.md
- text: "using Code"
href: external/find_data_programmatically.qmd
- text: "Authenticate"
href: external/NASA_Earthdata_Authentication.ipynb
- section: "Access Data"
contents:
- text: "in the Cloud"
href: external/access-cloud-python.ipynb
- text: "Locally"
href: external/access-local-python.ipynb
- text: "via OPeNDAP"
href: external/access-local-opendap.qmd
- text: "Read Data"
href: external/read_data.qmd
- text: "Download/Subscribe"
href: quarto_text/DataSubscriberDownloader.qmd
- section: quarto_text/Tutorials.qmd
contents:
- section: quarto_text/DatasetSpecificExamples.qmd
contents:
- section: quarto_text/ECCO.qmd
contents:
- text: "In-cloud Access"
href: external/ECCO_cloud_direct_access_s3.ipynb
- text: "Local Download Access"
href: external/ECCO_download_data.ipynb
- text: "Use Case Demo"
href: notebooks/meetings_workshops/workshop_osm_2022/ECCO_ssh_sst_corr.ipynb
- section: quarto_text/GHRSST.qmd
contents:
- text: "Use Case Demo"
href: notebooks/datasets/enso_MUR_tutorial_final.ipynb
- text: "MUR with Dask"
href: notebooks/Advanced_cloud/basic_dask.ipynb
- text: "Hurricane Helene"
href: notebooks/DataStories/HurricaneHelene_SST_SSH_Notebook.ipynb
- text: "In QGIS"
href: notebooks/GIS/MUR_SSTA_QGIS.md
- text: "OPeNDAP Access"
href: notebooks/opendap/MUR-OPeNDAP.ipynb
- text: "In-Cloud Access"
href: notebooks/datasets/MUR_SST_Washington_Comparison.ipynb
- section: quarto_text/OPERA.qmd
contents:
- section: "Visualization and Mosaicking"
contents:
- text: "Cloud"
href: notebooks/datasets/OPERA_GIS_Cloud.ipynb
- text: "Local"
href: notebooks/datasets/OPERA_GIS_Notebook.ipynb
- section: quarto_text/Sentinel6MF.qmd
contents:
- text: "Access in Cloud"
href: notebooks/sentinel-6/S6_Cloud_Notebook.ipynb
- text: "Access by Cycle/Pass"
href: notebooks/sentinel-6/Access_Sentinel6_By_CyclePass.ipynb
- text: "Access NRT Data"
href: notebooks/sentinel-6/Access_Sentinel6_NRT.ipynb
- text: "OPeNDAP Access"
href: notebooks/meetings_workshops/workshop_osm_2022/S6_OPeNDAP_Access_Gridding.ipynb
- section: quarto_text/SMAP.qmd
contents:
- text: "Use Case Demo"
href: notebooks/datasets/smap_imerg_tutorial.ipynb
- section: quarto_text/SMODE.qmd
contents:
- text: "Case Study Airborne Part 1"
href: external/DownloadDopplerScattData.ipynb
- text: "Case Study Airborne Part 2"
href: external/VisualizeDopplerScattData.ipynb
- text: "Case Study In Situ"
href: external/insitu_dataviz_demo.ipynb
- section: quarto_text/SWOT.qmd
contents:
- section: "Search"
contents:
- text: "via GUI"
href: quarto_text/SWOT.html#via-graphical-user-interface
- text: "Programmatically"
href: quarto_text/SWOT.html#programmatically-ie.-within-python-code-workflows
- text: "via Command Line"
href: quarto_text/SWOT.html#via-command-line---po.daac-subscriberdownloader-examples
- text: "SWOT Data Versioning"
href: quarto_text/SWOT.html#swot-data-versioning
- text: "Passes over Time"
href: quarto_text/SWOT.html#search-swot-passes-over-time
- text: "Spatial Coverage"
href: quarto_text/SWOT.html#swot-spatial-coverage
- text: "Tips: Spatial Search"
href: quarto_text/SWOT.html#tips-for-swot-spatial-search
- section: "Access & Visualization"
contents:
- section: "SWOT Hydrology"
contents:
- text: "Cloud"
href: notebooks/datasets/SWOTHR_s3Access.ipynb
- text: "Local"
href: notebooks/datasets/SWOTHR_localmachine.ipynb
- section: "SWOT Oceanography"
contents:
- text: "Cloud"
href: notebooks/datasets/DirectCloud_Access_SWOT_Oceanography.ipynb
- text: "Local"
href: notebooks/datasets/Localmachine_SWOT_Oceanography.ipynb
- text: "Hydrocron Time Series"
href: notebooks/datasets/Hydrocron_SWOT_timeseries_examples.ipynb
- text: "PIXC Area Aggregration"
href: notebooks/datasets/SWOT_PIXC_Area_localmachine.ipynb
- text: "PIXC Phase Unwrap"
href: notebooks/datasets/SWOT_PIXC_PhaseUnwrap_localmachine.ipynb
- section: "Raster Multifile"
contents:
- text: "Cloud"
href: notebooks/datasets/SWOT_Raster_Notebook_cloud.ipynb
- text: "Local"
href: notebooks/datasets/SWOT_Raster_Notebook_local.ipynb
- text: "Quality Flags"
href: notebooks/datasets/SWOT_quality_flag_demo.ipynb
- section: "River Profiles Data Story"
contents:
- text: "Cloud"
href: notebooks/DataStories/SWOTHR_Science_Application.ipynb
- text: "Local"
href: notebooks/DataStories/SWOTHR_Science_Application_localmachine.ipynb
- section: "GIS Workflows"
contents:
- text: "StoryMap"
href: https://storymaps.arcgis.com/stories/4a9184e813e540248040069580f6a54c
- text: "Shapefile Exploration"
href: notebooks/GIS/SWOT_GISshapefiles.ipynb
- text: "Datetime Conversion"
href: notebooks/GIS/SWOT_datetime_GIS.ipynb
- section: "Transform Data"
contents:
- text: "Datum Conversion"
href: quarto_text/SWOT_Datum.qmd
- text: "River Time Series"
href: notebooks/datasets/Hydrocron_SWOT_timeseries_examples.ipynb
- text: "Lake Time Series"
href: notebooks/GIS/SWOTshp_CSVconversion.ipynb
- section: "NetCDF to Geotiff"
contents:
- text: "Mac/Linux"
href: notebooks/GIS/Subscriber_nc_to_tif_SWOT.qmd
- text: "Windows"
href: notebooks/GIS/GDAL_NetCDF_GeoTIFF.ipynb
- text: "Tools"
href: quarto_text/SWOT.html#tools
- section: "SWORD of Science (SoS) Discharge"
contents:
- text: "Exploring river discharge"
href: notebooks/datasets/SWOT_L4_DAWG_SOS_DISCHARGE.ipynb
- text: "Exploring river discharge and gauge data"
href: notebooks/datasets/SWOT_L4_DAWG_SOS_DISCHARGE_gauges.ipynb
- text: "Plotting ALL river discharge algorithms"
href: notebooks/datasets/SWOT_L4_DAWG_SOS_DISCHARGE_gauges_plot_all.ipynb
- text: "Visualizing river discharge"
href: notebooks/datasets/SWOT_L4_DAWG_SOS_DISCHARGE_visualize.ipynb
- href: quarto_text/GIS.qmd
text: "GIS"
- section: quarto_text/CloudvsLocalWorkflows.qmd
contents:
- section: "Estuary Example"
contents:
- text: "Cloud"
href: notebooks/meetings_workshops/workshop_osm_2022/CloudAWS_AmazonRiver_Estuary_Exploration.ipynb
- text: "Local"
href: notebooks/meetings_workshops/workshop_osm_2022/Cloud_DirectDownload_AmazonRiver_Estuary_Exploration.ipynb
- section: "Reservoir Example"
contents:
- text: "Cloud"
href: notebooks/meetings_workshops/swot_ea_hackweek_2022/HLS-WaterDetection-Cloud.ipynb
- text: "Local"
href: notebooks/meetings_workshops/swot_ea_hackweek_2022/HLS-WaterDetection-Local.ipynb
- section: "Lake Extent Example"
contents:
- text: "Cloud"
href: notebooks/datasets/OPERA_GIS_Cloud.ipynb
- text: "Local"
href: notebooks/datasets/OPERA_GIS_Notebook.ipynb
- section: quarto_text/ScienceDataStories.qmd
contents:
- text: "Hurricane Helene"
href: notebooks/DataStories/HurricaneHelene_SST_SSH_Notebook.ipynb
- section: "Amazon Estuary Exploration"
contents:
- text: "Cloud"
href: notebooks/meetings_workshops/workshop_osm_2022/CloudAWS_AmazonRiver_Estuary_Exploration.ipynb
- text: "Local"
href: notebooks/meetings_workshops/workshop_osm_2022/Cloud_DirectDownload_AmazonRiver_Estuary_Exploration.ipynb
- text: "Monthly SST EOF Decomposition"
href: notebooks/DataStories/eof_example_ersst.ipynb
- text: "SSS Changes in the Arctic"
href: notebooks/meetings_workshops/arctic_2019.ipynb
- text: "Mississippi River Heights"
href: notebooks/meetings_workshops/swot_ea_hackweek_2022/River_Heights_in_the_Cloud.ipynb
- text: "SST Cross Validation"
href: notebooks/SWOT-EA-2021/Colocate_satellite_insitu_ocean.ipynb
- section: quarto_text/CloudOptimizedExamples.qmd
contents:
- text: "Zarr Access for NetCDF4 Files"
href: external/zarr_access.ipynb
- text: "zarr-eosdis-store library"
href: external/zarr-eosdis-store.ipynb
- text: "zarr2netCDF"
href: external/cof-zarr-reformat.ipynb
- section: quarto_text/Advanced.qmd
contents:
- section: notebooks/aws_lambda_sst/docs/documentation.md
contents:
- text: "Notebook"
href: notebooks/aws_lambda_sst/podaac-lambda-invoke-sst-global-mean.ipynb
- section: quarto_text/CloudOptimizedFormats.qmd
contents:
- text: "Zarr"
href: external/zarr_access.ipynb
- text: "Kerchunk Recipes"
href: notebooks/Advanced_cloud/kerchunk_recipes.ipynb
- text: "Kerchunk JSON Generation"
href: external/SWOT_to_kerchunk.ipynb
- text: "Dask, Kerchunk, & Zarr"
href: external/SWOT_SSH_dashboard.ipynb
- section: quarto_text/Dask_Coiled.qmd
contents:
- text: "Basic Dask"
href: notebooks/Advanced_cloud/basic_dask.ipynb
- text: "Dask Function Replication Example"
href: notebooks/Advanced_cloud/dask_delayed_01.ipynb
- text: "Dask Dataset Chunking Example"
href: notebooks/Advanced_cloud/dask_cluster_01.ipynb
- text: "Coiled Function Replication Example"
href: notebooks/Advanced_cloud/coiled_function_01.ipynb
- text: "Coiled Dataset Chunking Example"
href: notebooks/Advanced_cloud/coiled_cluster_01.ipynb
- href: quarto_text/Experimental.qmd
text: "In Development"
- href: quarto_text/Workshops.qmd
text: "Workshops"
- section: quarto_text/Webinars.qmd
contents:
- text: "July 2022 Earthdata Webinar Notebook"
href: external/July_2022_Earthdata_Webinar.ipynb
- href: quarto_text/TechGuides.qmd
text: "Tech Guides"
- section: quarto_text/Contribute.qmd
contents:
- text: "Tutorial Template"
href: notebooks/Tutorials_TEMPLATE.ipynb
- href: quarto_text/Questions.qmd
text: "Questions?"
format:
html:
include-in-header: gtm_code_head.html
include-before-body: gtm_code_body.html
theme:
light: cosmo # from https://quarto.org/docs/output-formats/html-themes.html
dark: darkly
code-copy: true
code-overflow: wrap
toc: true
filters:
- include-files.lua
- quarto