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UCL Bioinformatics Group

UCL bioinformatics group repositories

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  1. protein-vae protein-vae Public

    Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies

    Python 81 17

  2. DMPfold DMPfold Public

    De novo protein structure prediction using iteratively predicted structural constraints

    C 55 16

  3. cgdms cgdms Public

    Differentiable molecular simulation of proteins with a coarse-grained potential

    Python 53 4

  4. psipred psipred Public

    PSIPRED Protein Secondary Structure Predictor

    Java 52 12

  5. DMPfold2 DMPfold2 Public

    Fast and accurate protein structure prediction

    Python 49 12

  6. s4pred s4pred Public

    A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

    Python 48 9

Repositories

Showing 10 of 46 repositories
  • merizo_search Public

    Fast protein domain structure embedding+search tool

    psipred/merizo_search’s past year of commit activity
    Python 8 GPL-3.0 3 0 0 Updated Dec 10, 2024
  • psipred_react Public

    A react port of the psipred_webserver dynamic pages

    psipred/psipred_react’s past year of commit activity
    JavaScript 1 0 1 0 Updated Dec 5, 2024
  • psipred_branding Public

    contains all our branding files, logos and info

    psipred/psipred_branding’s past year of commit activity
    0 0 0 0 Updated Dec 3, 2024
  • Merizo Public

    Fast and accurate protein domain segmentation using Invariant Point Attention

    psipred/Merizo’s past year of commit activity
    Python 27 GPL-3.0 6 1 0 Updated Nov 27, 2024
  • hspred Public

    Protein-protein interaction hotspot predictor

    psipred/hspred’s past year of commit activity
    Perl 1 0 0 0 Updated Nov 27, 2024
  • MemEmbed Public

    Membrane protein orientation using knowledge-bases potentials

    psipred/MemEmbed’s past year of commit activity
    C++ 1 0 0 0 Updated Nov 27, 2024
  • metsite Public

    Metal ion ligand contact predictor

    psipred/metsite’s past year of commit activity
    C++ 1 1 0 0 Updated Nov 27, 2024
  • DMPmetal Public

    repository for the DMPmetal metal binding site predictor

    psipred/DMPmetal’s past year of commit activity
    Python 0 0 0 0 Updated Nov 25, 2024
  • dompred Public

    Protein sequence domain predictor

    psipred/dompred’s past year of commit activity
    Perl 1 GPL-3.0 0 0 0 Updated Nov 25, 2024
  • mempack Public

    Membrane alpha helix packing and orientation predicrtor

    psipred/mempack’s past year of commit activity
    Perl 1 1 0 0 Updated Nov 25, 2024

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