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Hi, it seems fastaq breaks on some lines. Second, could there be an option to keep the remainder sequence, instead of discarding it?
... Warning, sequence 1632257 191 25609 too short. Skipping it... Warning, sequence 1632262 318 5425 too short. Skipping it... Warning, sequence 1632263 187 200 too short. Skipping it... Warning, sequence 1632264 282 990 too short. Skipping it... Warning, sequence 1632268 319 3229 too short. Skipping it... Warning, sequence 1632275 326 2232 too short. Skipping it... Warning, sequence 1632278 319 2078 too short. Skipping it... Warning, sequence 1632279 311 1726 too short. Skipping it... Traceback (most recent call last): File "/usr/lib/python-exec/python3.5/fastaq", line 71, in <module> exec('pyfastaq.runners.' + task + '.run("' + tasks[task] + '")') File "<string>", line 1, in <module> File "/usr/lib64/python3.5/site-packages/pyfastaq/runners/to_perfect_reads.py", line 51, in run middle_pos = random.randint(ceil(0.5 *isize), floor(len(ref) - 0.5 * isize)) File "/usr/lib64/python3.5/random.py", line 227, in randint return self.randrange(a, b+1) File "/usr/lib64/python3.5/random.py", line 205, in randrange raise ValueError("empty range for randrange() (%d,%d, %d)" % (istart, istop, width)) ValueError: empty range for randrange() (191,191, 0) $ fastaq version 3.17.0 $
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Hi,
it seems fastaq breaks on some lines. Second, could there be an option to keep the remainder sequence, instead of discarding it?
The text was updated successfully, but these errors were encountered: