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Hello, I ran Roary on prokka files and then created a nwk tree on BVBRC, and then I ran my command as such
python3 /home/aryeh/roary_plots.py treeWithGenomeNames.nwk gene_presence_absence.csv
and obtained the error
raise KeyError(f"None of [{key}] are in the [{axis_name}]") KeyError: 'None of [Index(['Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'D2013"', 'Tree"', 'Tree"',\n 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"',\n 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"',\n 'Tree"', 'Tree"', 'Tree"'],\n dtype='object')] are in the [columns]'
Please help thank you!
The text was updated successfully, but these errors were encountered:
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Hello,
I ran Roary on prokka files and then created a nwk tree on BVBRC, and then I ran my command as such
python3 /home/aryeh/roary_plots.py treeWithGenomeNames.nwk gene_presence_absence.csv
and obtained the error
raise KeyError(f"None of [{key}] are in the [{axis_name}]")
KeyError: 'None of [Index(['Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'D2013"', 'Tree"', 'Tree"',\n 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"',\n 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"', 'Tree"',\n 'Tree"', 'Tree"', 'Tree"'],\n dtype='object')] are in the [columns]'
Please help thank you!
The text was updated successfully, but these errors were encountered: