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Cannot open *.gff_fixed.gff: No such file or directory #78

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ireneortega opened this issue Jan 24, 2022 · 0 comments
Open

Cannot open *.gff_fixed.gff: No such file or directory #78

ireneortega opened this issue Jan 24, 2022 · 0 comments

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@ireneortega
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I installed GFF3toEMBL via docker and this error appears when running the tool:

irene@irene-VirtualBox:~$ docker run --rm -it -v /home/irene:/data sangerpathogens/gff3toembl gff3_to_embl --authors "Ortega, I." --genome_type linear --classification PROK --output_filename H660_240122.embl --translation_table 11 "Campylobacter jejuni" 197 PRJEB50313 "Campylobacter jejuni strain H660" /home/irene/H660.gff
fopen(): cannot open file '/home/irene/H660.gff_fixed.gff': No such file or directory
Failed to sort and tidy gff file with GT

How can I solve it?
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@ireneortega