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install failure,what should i do? #37

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wlh1234 opened this issue May 14, 2023 · 2 comments
Open

install failure,what should i do? #37

wlh1234 opened this issue May 14, 2023 · 2 comments

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@wlh1234
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wlh1234 commented May 14, 2023

Collecting pymummer
Using cached pymummer-0.11.0.tar.gz (8.2 kB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [6 lines of output]
Cannot install because some programs from the MUMer package not found.
Checking MUMmer programs found in path:
NOT FOUND nucmer
NOT FOUND show-coords
NOT FOUND show-snps
NOT FOUND delta-filter
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

@martinghunt
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Mummer needs to be installed, so that these executables are in your $PATH: nucmer, show-coords, show-snps, delta-filter.

Mummer is available here:
https://github.com/mummer4/mummer/releases

@Adamtaranto
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Fixed in #40

Can now install without mummer deps present in $PATH. Pymummer will raise an error upon import if deps are not found.

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