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Use TensorBoard as default logger #2645

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martinkim0 opened this issue Apr 2, 2024 · 0 comments
Open

Use TensorBoard as default logger #2645

martinkim0 opened this issue Apr 2, 2024 · 0 comments
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enhancement good first issue P2
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scvi-tools 2.0

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@martinkim0 martinkim0 mentioned this issue Apr 3, 2024
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martinkim0 added a commit that referenced this issue Apr 3, 2024
@martinkim0
chore(misc): update direct dependencies (#2669)
d51d370 
adds the following as direct dependencies:

- tensorboard>=2.0 for upcoming #2645
- sparse>=0.14.0 for upcoming #2549 (it's also currently optional for
cricitism)
- xarray>=2023.2.0 for upcoming #2549 (it's also currently optional for
cricitism)

removes the following direct dependency specifications:

- optax: required by flax
- numpy>=1.21.0: anndata requires numpy>=1.23
- pandas>=1.0: anndata requires pandas>=1.4, !=2.1.0rc0, !=2.1.2
- scipy: anndata requires scipy>1.8, <1.13.0rc1
- h5py>=2.9.0: anndata requires h5py>=3.1
- tqdm>=4.56.0: lightning requires tqdm>=4.57.0, <4.67.0
- jax>=0.4.4: required by flax
- jaxlib>=0.4.3: required by flax
- torch>=1.8.0: lightning requires torch>=1.13.0, <2.3.0
- anndata>=0.7.5: mudata requires anndata>=0.8

these dependencies are only removed because other direct dependencies
(1) also have them as direct dependencies and (2) have tighter version
bounds/restrictions than we currently have.
@martinkim0 martinkim0 added the P2 label Jul 12, 2024
@martinkim0 martinkim0 added this to the scvi-tools 2.0 milestone Jul 12, 2024
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enhancement good first issue P2
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