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Hi,
When I run sq.gr.nhood_enrichment(sdata["table"], n_jobs=10, cluster_key='id'), the following error occurred:
No matching definition for argument type(s) readonly array(uint32, 1d, C), array(uint32, 1d, C), array(uint32, 1d, C)
File "/home/wangjw/data/work/spatial/pipeline.smk", line 317, in __rule_spatial_graph
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/squidpy/gr/_nhood.py", line 186, in nhood_enrichment
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/squidpy/_utils.py", line 171, in wrapper
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/joblib/parallel.py", line 1952, in __call__
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/joblib/parallel.py", line 1595, in _get_outputs
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/joblib/parallel.py", line 1699, in _retrieve
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/joblib/parallel.py", line 1734, in _raise_error_fast
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/joblib/parallel.py", line 736, in get_result
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/site-packages/joblib/parallel.py", line 754, in _return_or_raise
File "/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/concurrent/futures/thread.py", line 58, in run
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
^CException ignored in: <module 'threading' from '/home/wangjw/programs/miniconda3/envs/py311/lib/python3.11/threading.py'>
Traceback (most recent call last):
Is it relate to the parameters numba_parallel and backend ?
The text was updated successfully, but these errors were encountered:
Hi,
When I run
sq.gr.nhood_enrichment(sdata["table"], n_jobs=10, cluster_key='id')
, the following error occurred:Is it relate to the parameters
numba_parallel
andbackend
?The text was updated successfully, but these errors were encountered: