NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%>%")
export(.CM_to_NM)
export(.NM2winNM)
export(.elementNumber)
export(.extract_GT_to_CM)
export(.extract_haps)
export(.grepa)
export(.gt_to_popsum)
export(.rank_variants)
export(.read_body_gz)
export(.read_meta_gz)
export(.seq_to_rects)
export(.shankaR)
export(.vcf_stats_gz)
export(.window_init)
export(.windowize_NM)
export(.windowize_annotations)
export(.windowize_fasta)
export(.windowize_variants)
export(.write_fasta)
export(.write_vcf_body)
export(AD_frequency)
export(INFO2df)
export(NM2winNM)
export(addID)
export(alleles2consensus)
export(ann2chromR)
export(chromR2vcfR)
export(chromo)
export(chromoqc)
export(create.chromR)
export(dr.plot)
export(extract.gt)
export(extract.haps)
export(extract.indels)
export(extract.info)
export(extract_gt_tidy)
export(extract_info_tidy)
export(freq_peak)
export(freq_peak_plot)
export(genetic_diff)
export(get.alleles)
export(getALT)
export(getCHROM)
export(getFILTER)
export(getFIX)
export(getID)
export(getINFO)
export(getPOS)
export(getQUAL)
export(getREF)
export(gt.to.popsum)
export(gt2popsum)
export(heatmap.bp)
export(is.biallelic)
export(is.het)
export(is.polymorphic)
export(is_het)
export(maf)
export(masker)
export(masplit)
export(metaINFO2df)
export(null.plot)
export(ordisample)
export(pairwise_genetic_diff)
export(peak_to_ploid)
export(proc.chromR)
export(queryMETA)
export(rank.variants.chromR)
export(rePOS)
export(read.vcfR)
export(regex.win)
export(seq2chromR)
export(seq2rects)
export(var.win)
export(variant.table)
export(vcfR2DNAbin)
export(vcfR2chromR)
export(vcfR2genind)
export(vcfR2genlight)
export(vcfR2loci)
export(vcfR2migrate)
export(vcfR2tidy)
export(vcf_field_names)
export(win.table)
export(windowize.NM)
export(write.fasta)
export(write.var.info)
export(write.vcf)
export(write.win.info)
export(z.score)
exportClasses(chromR)
exportClasses(vcfR)
exportMethods(dim)
exportMethods(head)
exportMethods(length)
exportMethods(nrow)
exportMethods(plot)
exportMethods(print)
exportMethods(rbind2)
import(ape)
import(methods)
import(pinfsc50)
import(vegan)
importFrom(Rcpp,sourceCpp)
importFrom(magrittr,"%>%")
importFrom(stats,setNames)
importFrom(utils,object.size)
importFrom(viridisLite,viridis)
useDynLib(vcfR, .registration = TRUE)