environment.yml

name: glmhmm
channels:
  - defaults
  - conda-forge
dependencies:
  - pip==21.3.1
  - python==3.7.6
  - pip:
    - setuptools==60.2.0 # necessary for ibllib installation
    - wheel==0.37.1 # necessary for ibllib installation
    - opencv-python==3.4.13.47 # necessary for ibllib installation
    - wget==3.2 # necessary for IBL data analysis
    - ibllib==1.4.14 # necessary for IBL data analysis
    - matplotlib==3.4.0 # 3.1.3
    - numba==0.48.0
    - numpy==1.18.1
    - pandas==1.0.5 # https://github.com/numpy/numpy/issues/18355
    - pytest==6.2.5
    - scikit-learn==0.22.1
    - scipy==1.4.1
    - seaborn==0.12.0 # 0.10 before
    - defopt==6.3.0
    - joblib==1.3.2 # necessary for pararell computation on slurm
    - dask-jobqueue==0.7.0 # necessary for pararell computation on slurm
    - distributed==2021.10.0 # necessary for pararell computation on slurm
    - threadpoolctl==2.2.0 # necessary for pararell computation on slurm
    - bokeh==2.4.3 # necessary to display dask dashboard