diff --git a/docs/workflows/phylogenetic_construction/augur.md b/docs/workflows/phylogenetic_construction/augur.md index 2375a6685..88adb3c9f 100644 --- a/docs/workflows/phylogenetic_construction/augur.md +++ b/docs/workflows/phylogenetic_construction/augur.md @@ -284,13 +284,13 @@ The Nextstrain team hosts documentation surrounding the Augur workflow → Auspi | **Variable** | **Type** | **Description** | | --- | --- | --- | | aligned_fastas | File | A FASTA file of the aligned genomes | -| augur_fasttree_version | String | The fasttree version used | -| augur_iqtree_model_used | String | The iqtree model used during augur tree | -| augur_iqtree_version | String | The iqtree version used during augur tree | +| augur_fasttree_version | String | The fasttree version used, blank if other tree method used | +| augur_iqtree_model_used | String | The iqtree model used during augur tree, blank if iqtree not used | +| augur_iqtree_version | String | The iqtree version used during augur tree (defualt), blank if other tree method used | | augur_mafft_version | String | The mafft version used in augur align | | augur_phb_analysis_date | String | The date the analysis was run | | augur_phb_version | String | The version of the Public Health Bioinformatics (PHB) repository used | -| augur_raxml_version | String | The version of raxml used during augur tree | +| augur_raxml_version | String | The version of raxml used during augur tree, blank if other tree method used | | augur_version | String | Version of Augur used | | auspice_input_json | File | JSON file used as input to Auspice | | combined_assemblies | File | Concatenated FASTA file containing all samples |