diff --git a/docs/workflows/phylogenetic_construction/augur.md b/docs/workflows/phylogenetic_construction/augur.md index 24c53d8f7..d8eb10f9f 100644 --- a/docs/workflows/phylogenetic_construction/augur.md +++ b/docs/workflows/phylogenetic_construction/augur.md @@ -284,13 +284,13 @@ The Nextstrain team hosts documentation surrounding the Augur workflow → Auspi | **Variable** | **Type** | **Description** | | --- | --- | --- | | aligned_fastas | File | A FASTA file of the aligned genomes | +| augur_iqtree_model_used | String | The iqtree model used during augur tree | | augur_phb_analysis_date | String | The date the analysis was run | | augur_phb_version | String | The version of the Public Health Bioinformatics (PHB) repository used | | augur_version | String | Version of Augur used | | auspice_input_json | File | JSON file used as input to Auspice | | combined_assemblies | File | Concatenated FASTA file containing all samples | | distance_tree | File | The distance tree created in Newick (.nwk) format | -| iqtree_model_used | String | The iqtree model used during augur tree | | keep_list | File | A list of samples included in the phylogenetic tree | | metadata_merged | File | Tab-delimited text file of the merged augur_metadata input files from all samples | | snp_matrix | File | The SNP distance matrix for all samples used in the phylogenetic tree |