From b2308160136fa9cb9258381a1ef0d8a6c2ad8410 Mon Sep 17 00:00:00 2001
From: Sage Wright <sage.wright@theiagen.com>
Date: Mon, 16 Dec 2024 20:52:29 +0000
Subject: [PATCH] remove duplicate set -euo pipefail

---
 tasks/utilities/file_handling/task_cat_lanes.wdl | 2 --
 1 file changed, 2 deletions(-)

diff --git a/tasks/utilities/file_handling/task_cat_lanes.wdl b/tasks/utilities/file_handling/task_cat_lanes.wdl
index 8efb2c363..d3755eba9 100644
--- a/tasks/utilities/file_handling/task_cat_lanes.wdl
+++ b/tasks/utilities/file_handling/task_cat_lanes.wdl
@@ -28,8 +28,6 @@ task cat_lanes {
     
     exists() { [[ -f $1 ]]; }
 
-    set -euo pipefail
-
     cat ~{read1_lane1} ~{read1_lane2} ~{read1_lane3} ~{read1_lane4} > "~{samplename}_merged_R1.fastq.gz"
 
     if exists "~{read2_lane1}" ; then