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GAMBIT misclassified genome Klebsiella/E. coli #663

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michellescribner opened this issue Oct 30, 2024 · 0 comments
Open

GAMBIT misclassified genome Klebsiella/E. coli #663

michellescribner opened this issue Oct 30, 2024 · 0 comments

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@michellescribner
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🐛

📝 Describe the Issue

Theiagen received the following report of a GAMBIT bug:

"Mislabeled genome in the current GAMBIT database included with TheiaProk v2.2.1 (gambit-metadata-2.0.0-20240628.gdb; gambit-signatures-2.0.0-20240628.gs). GCA_900083935.1 is labeled as Klebsiella oxytoca in the database, but seems to be E. coli instead- it looks like the RefSeq assembly for this isolate (GCF_900083935.1) has been suppressed due to this mismatch."

This is a GAMBIT issue, but I am documenting it here as it is relevant to TheiaProk.

🔁 How to Reproduce

💻 Version Information

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