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[Freyja] Remove lineage file if not SARS-CoV-2 #688

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Michal-Babins opened this issue Dec 11, 2024 · 0 comments
Open

[Freyja] Remove lineage file if not SARS-CoV-2 #688

Michal-Babins opened this issue Dec 11, 2024 · 0 comments

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@Michal-Babins
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🆒

📌 Explain the Request

Remove SARS-CoV-2 lineage file if pathogen is not SARS-CoV-2. As of Freyja release v1.5.2, the pathogen flag is exposed and this leads to other allowed pathogens outside of SARS-CoV-2. For other pathogens we don't want the pangolineage.
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