From 8c81dfb8d6d734c541c57f6f5da00721738b0f00 Mon Sep 17 00:00:00 2001
From: Sage Wright <40403716+sage-wright@users.noreply.github.com>
Date: Thu, 16 Mar 2023 13:52:03 -0400
Subject: [PATCH] change csv -> tsv

---
 scripts/gisaid_metadata_cleanser.py | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/scripts/gisaid_metadata_cleanser.py b/scripts/gisaid_metadata_cleanser.py
index 70d3f3f..7bc72ec 100755
--- a/scripts/gisaid_metadata_cleanser.py
+++ b/scripts/gisaid_metadata_cleanser.py
@@ -14,9 +14,9 @@ def get_opts():
     return args
 arguments = get_opts()
 
-# read in metadata csv file
-meta_csv1 = arguments.csv_meta_file
-meta_df1 = pd.read_csv(meta_csv1, delimiter='\t', dtype={'strain': str, 'age': str})
+# read in metadata tsv file
+meta_tsv1 = arguments.tsv_meta_file
+meta_df1 = pd.read_csv(meta_tsv1, delimiter='\t', dtype={'strain': str, 'age': str})
 
 
 table_name = "entity:" + arguments.table_name + "_id"