The code contained in the moth-mating project was developed to numerically simulate moth reproductive activities. It is described in:
Tracy L. Stepien, Cole Zmurchok, James B. Hengenius, Rocio Marilyn Caja Rivera, Maria R. D'Orsogna, and Alan E. Lindsay, Moth mating: Modeling female pheromone calling and male navigational strategies to optimize reproductive success, Applied Science, 10 (2020), 6543, DOI: 10.3390/app10186543.
We utilized the MothPy package developed for the work described in:
Liberzon, A.; Harrington, K.; Daniel, N.; Gurka, R.; Harari, A.; Zilman, G. Moth-inspired navigation algorithm in a turbulent odor plume from a pulsating source. PLOS ONE 2018, 6, 1–18. doi:10.1371/journal.pone.0198422.
Benelli, N.; Gurka, R.; Golov, Y.; Harari, A.; Zilman, G.; Liberzon, A. Open source computational simulation for a moth-inspired navigation algorithm, 2019. bioRxiv: 744912, doi:10.1101/744912.
Benelli, N.; Liberzon, A. alexliberzonlab/mothpy: First release of mothpy - the moth-inspired navigator flying in pompy simulator (Version 0.0.1), 2019. Zenodo, doi:10.5281/zenodo.2672828.
which uses the PomPy package developed for the work described in:
Farrell, J.A.; Murlis, J.; Long, X.; Li, W.; Cardé, R.T. Filament-based atmospheric dispersion model to achieve short time-scale structure of odor plumes. Environ. Fluid Mech. 2002, 2, 143–169. doi:10.1023/A:1016283702837.
- ABM: Code to run simulations of our agent-based model
- figures_in_paper: Code to create Figures 2-10 in our paper
- our_mothpy: Our modification of the MothPy package to run simulations
- our_mothpy/simulations_and_figures: Code to create Figures A1-A2 in our paper.
- our_mothpy/simulations_and_figures/simulation_data: Output of our MothPy simulations.
Copyright 2018-2020 Alan Lindsay, James Hengenius, Tracy Stepien, Cole Zmurchok. This is free software made available under the MIT License. For details see the LICENSE file.