-
-
Notifications
You must be signed in to change notification settings - Fork 316
204 lines (172 loc) · 6.2 KB
/
ci-tests.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
name: CI Tests
on:
push:
branches:
- main
- dev
- bugfix
- "release/*"
pull_request:
branches:
- main
- dev
- bugfix
- "release/*"
env:
DEFAULT_PYTHON: 3.8
CI: "true"
# Increase this value to reset cache if environment.yml has not changed
CACHE_VERSION: 6
concurrency:
group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}'
cancel-in-progress: true
jobs:
lint:
name: Linters (${{ matrix.python-version }})
runs-on: ubuntu-latest
strategy:
fail-fast: true
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- uses: actions/cache@v3
with:
path: ~/.cache/pip # ubuntu location
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install dependencies
run: |
python -m pip install nox pre_commit \
mypy==0.982 \
types-click \
types-pyyaml \
types-pkg_resources \
types-requests \
types-pytz
- name: Pip info
run: python -m pip list
- name: Check requirements
run: >
nox
-db virtualenv -r
--non-interactive
--python ${{ matrix.python-version }}
--session requirements-${{ matrix.python-version }}
- name: Sort Imports
run: pre-commit run isort --all-files
- name: Black
if: always()
run: pre-commit run black --all-files
- name: Pylint
if: always()
run: pre-commit run pylint --all-files
- name: Mypy Type Checking
if: always()
run: pre-commit run mypy --all-files
tests:
name: >
CI Tests (${{ matrix.python-version }}, ${{ matrix.os }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }})
runs-on: ${{ matrix.os }}
defaults:
run:
shell: pwsh
env:
PYTHONUTF8: 1
NOX_FLAGS: -v --no-install --no-venv --non-interactive
PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append
HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci
strategy:
fail-fast: true
matrix:
os: ["ubuntu-latest", "macos-latest", "windows-latest"]
python-version: ["3.8", "3.9", "3.10", "3.11"]
pandas-version: ["1.5.3", "2.0.3"]
pydantic-version: ["1.10.11", "2.3.0"]
include:
- os: ubuntu-latest
pip-cache: ~/.cache/pip
- os: macos-latest
pip-cache: ~/Library/Caches/pip
- os: windows-latest
pip-cache: ~/AppData/Local/pip/Cache
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Cache conda
uses: actions/cache@v3
env:
# Increase this value to reset cache if etc/environment.yml has not changed
CACHE_NUMBER: 2
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
id: cache
- name: Cache pip
uses: actions/cache@v3
with:
path: ${{ matrix.pip-cache }}
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install deps
run: pip install -r ci/requirements-py${{ matrix.python-version }}-pandas${{ matrix.pandas-version }}-pydantic${{ matrix.pydantic-version }}.txt
- run: |
pip list
printenv | sort
- name: Unit Tests - Core
run: pytest tests/core ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - Hypotheses
run: pytest tests/hypotheses ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - IO
run: pytest tests/io ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - Mypy
# mypy tests hang on windows
if: ${{ matrix.os != 'windows-latest' }}
run: pytest -v tests/mypy ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - Strategies
run: pytest tests/strategies ${{ env.PYTEST_FLAGS }} ${{ env.HYPOTHESIS_FLAGS }}
- name: Unit Tests - FastAPI
# there's an issue with the fastapi tests in CI that's not reproducible locally
# when pydantic > v2
run: pytest tests/fastapi ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - GeoPandas
run: pytest tests/geopandas ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - Dask
if: ${{ matrix.pandas-version != '2.0.3' }}
run: pytest tests/dask ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - Pyspark
if: ${{ matrix.os != 'windows-latest' && matrix.pandas-version != '2.0.3' }}
run: pytest tests/pyspark ${{ env.PYTEST_FLAGS }}
- name: Unit Tests - Modin-Dask
if: ${{ matrix.pandas-version != '2.0.3' }}
run: pytest tests/modin ${{ env.PYTEST_FLAGS }}
env:
CI_MODIN_ENGINES: dask
- name: Unit Tests - Modin-Ray
# ray CI issues with the following:
# - windows, python 3.10
# Tracking issue: https://github.com/modin-project/modin/issues/5466
if: ${{ matrix.os != 'windows-latest' && matrix.pandas-version != '2.0.3' }}
run: pytest tests/modin ${{ env.PYTEST_FLAGS }}
env:
CI_MODIN_ENGINES: ray
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
- name: Check Docstrings
if: ${{ matrix.os != 'windows-latest' && matrix.python-version == '3.11' && matrix.pandas-version == '2.0.3' }}
run: nox ${{ env.NOX_FLAGS }} --session doctests
- name: Check Docs
if: ${{ matrix.os != 'windows-latest' && matrix.python-version == '3.11' && matrix.pydantic-version == '2.0.3' }}
run: nox ${{ env.NOX_FLAGS }} --session docs