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Fixed install from github #4

Fixed install from github

Fixed install from github #4

Workflow file for this run

name: Linux
on:
workflow_dispatch:
pull_request:
push:
branches: [master]
concurrency:
group: ${{ github.workflow }}-${{ github.job }}-${{ github.ref }}
cancel-in-progress: true
defaults:
run:
shell: bash -e -l {0}
jobs:
build:
runs-on: ubuntu-20.04
name: ${{ matrix.sys.compiler }} ${{ matrix.sys.version }}
strategy:
fail-fast: false
matrix:
sys:
- {compiler: gcc, version: '8'}
- {compiler: gcc, version: '9'}
- {compiler: gcc, version: '10'}
- {compiler: gcc, version: '11'}
- {compiler: clang, version: '15'}
- {compiler: clang, version: '16'}
steps:
- name: Setup GCC
if: ${{ matrix.sys.compiler == 'gcc' }}
run: |
GCC_VERSION=${{ matrix.sys.version }}
sudo apt-get update
sudo apt-get --no-install-suggests --no-install-recommends install g++-$GCC_VERSION
CC=gcc-$GCC_VERSION
echo "CC=$CC" >> $GITHUB_ENV
CXX=g++-$GCC_VERSION
echo "CXX=$CXX" >> $GITHUB_ENV
- name: Setup clang
if: ${{ matrix.sys.compiler == 'clang' }}
run: |
LLVM_VERSION=${{ matrix.sys.version }}
wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add - || exit 1
if [[ $LLVM_VERSION -ge 13 ]]; then
sudo add-apt-repository "deb http://apt.llvm.org/focal/ llvm-toolchain-focal-$LLVM_VERSION main" || exit 1
else
sudo add-apt-repository "deb http://apt.llvm.org/focal/ llvm-toolchain-focal main" || exit 1
fi || exit 1
sudo apt-get update || exit 1
sudo apt-get --no-install-suggests --no-install-recommends install clang-$LLVM_VERSION || exit 1
sudo apt-get --no-install-suggests --no-install-recommends install g++-9 g++-9-multilib || exit 1
sudo ln -s /usr/include/asm-generic /usr/include/asm
CC=clang-$LLVM_VERSION
echo "CC=$CC" >> $GITHUB_ENV
CXX=clang++-$LLVM_VERSION
echo "CXX=$CXX" >> $GITHUB_ENV
- name: Checkout code
uses: actions/checkout@v3
- name: Set conda environment
uses: mamba-org/setup-micromamba@v1
with:
environment-file: environment-dev.yml
cache-environment: true
- name: Configure using CMake
run: cmake -Bbuild -DDOWNLOAD_GTEST=ON -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DCMAKE_C_COMPILER=$CC -DCMAKE_CXX_COMPILER=$CXX $(Build.SourcesDirectory)
- name: Install
working-directory: build
run: cmake --install .
- name: Build
working-directory: build
run: cmake --build . --target test_xtensor_r --parallel 8
- name: Install R package
working-directory: build
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
run: |
echo "which tar"
which tar
export TAR="/usr/bin/tar"
R -e "library(devtools); install_github('xtensor-stack/Xtensor.R', configure.args = '--novendor')"
- name: Run tests (C++)
working-directory: build/test
run: ./test_xtensor_r
- name: Run tests (R)
working-directory: test
run: |
mkdir ~/.R
touch ~/.R/Makevars
echo "CXX14=$CXX" >> ~/.R/Makevars
echo "CXX14FLAGS=-fPIC -O2" >> ~/.R/Makevars
Rscript ./unittest.R