forked from AABoyles/MicrobeTrace
-
Notifications
You must be signed in to change notification settings - Fork 39
FASTA Files
ikb6 edited this page Jan 20, 2022
·
4 revisions
A FASTA file represents one or more DNA sequences. It is a simple text format, composed of a greater than sign (>) followed by an identifier, followed by a nucleotide string (actg) on a new line.
For example:
> ID_of_person_A
CCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAARATAGGRGGGCA
ACTAAAGGAAGCTCTACTAGATACAGGAGCAGATGATACAGTATTAGAAGAAC
TRAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTT
ATCAAAGTAAGACAGTATGATCAGGTAKCCATAGAAATCTGTGGGCATAAAGC
TGTAGGTACAGTATTAGTAGGACCTACACCAGTCAACATAATTGG
> ID_of_person_B
CCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAARATAGGRGGGCA
ACTAAAGGAAGCTCTACTAGATACAGGAGCAGATGATACAGTATTAGAAGAAC
TRAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTT
ATCAAAGTAAGACAGTATGATCAGGTAKCCATAGAAATCTGTGGGCATAAAGC
TGTAGGTACAGTATTAGTAGGACCTACACCAGTCAACATAATTGG
The file extension varies (.FASTA, .FAS, .FA). Any file that doesn't have a csv file extension will be parsed as a FASTA file.
Copyright 2017-2020 Centers for Disease Control and Prevention • Acknowledgements