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(https://microbetrace.cdc.gov/MicrobeTrace/)
MicrobeTrace is a web-browser based application that renders existing data from high-risk contact networks. The network visualization can be customized according to supplemental data sources and mathematical inferences like the most probable transmission pathways. MicrobeTrace is a highly responsive, visual sequence analytics tool which can reduce the gap between data production and analytics and help you to discover, understand, and display relationships between patients (nodes). MicrobeTrace can be deployed on laptops to locations without any Internet access, thereby reducing both the startup cost and analysis time and effort.
or read through the rest of the page for training resources before you try the tool.
If you'd rather just reach us to ask questions or would like a live demonstration of the tool, email us at : [email protected]
For additional information, download and read the User Manual ---NEW!!! WE NOW HAVE A SPANISH VERSION OF THE MANUAL(https://github.com/CDCgov/MicrobeTrace/blob/master/docs/MicrobeTrace_manual_May_2021_Espanol_508.docx)!!--- and watch the MicrobeTrace Webinar.
- Watch MicrobeTrace - Overview
- Watch MicrobeTrace - Design and development
- System Requirements
- Download Sample Data
- Watch Using MicrobeTrace - Loading files
- Watch Using MicrobeTrace - Loading and aligning sequence data
- Watch Using MicrobeTrace - Overlaying genetic distance network with edge list data
Types of Files:
Special Files:
Simulated Data:
| View | Docs | Demo |
|---|---|---|
| 2D Network | Read 🗎 | Watch |
| 3D Network | Read 🗎 | Watch |
| Histogram | Read 🗎 | Watch |
| Table | Read 🗎 | Watch |
| Aggregation | Read 🗎 | Watch |
| Bubbles | Read 🗎 | Watch |
| Flow Diagram | Read 🗎 | Watch |
| Scatterplot | Read 🗎 | |
| Waterfall | Read 🗎 | Watch |
| Map | Read 🗎 | Watch |
| Globe | Read 🗎 | |
| Gantt | Read 🗎 | Watch |
| Timeline | Read 🗎 | |
| Heatmap | Read 🗎 | Watch |
| Phylogenetic Tree | Read 🗎 | Watch |
| Sequences | Read 🗎 | Watch |