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MicrobeTrace is a web application that renders existing data from high-risk contact networks. The network visualization can be customized according to supplemental data sources and mathematical inferences like the most probable transmission pathways. MicrobeTrace is a highly responsive, visual sequence analytics tool which can reduce the gap between data production and analytics and help you to discover, understand, and display relationships between patients (nodes). MicrobeTrace can be deployed on laptops to locations without any Internet access, thereby reducing both the startup cost and analysis time and effort.

For additional information, download and read the User Manual and watch the MicrobeTrace Webinar.

Before Use

• Watch MicrobeTrace - Overview
• Watch MicrobeTrace - Design and development
• System Requirements
• Download Sample Data

Inputs

Loading Files

• Watch Using MicrobeTrace - Loading files
• Watch Using MicrobeTrace - Loading and aligning sequence data
• Watch Using MicrobeTrace - Overlaying genetic distance network with edge list data

Types of Files:

• FASTA Files
• Edge Lists
• Node Lists
• Distance Matrices
• Newick Trees

Special Files:

• MicrobeTrace Save Files
• HIV-TRACE JSON Files
• SVGs

Simulated Data:

• Spawning Random Sequences

Views

View	Docs	Demo
2D Network	Read 🗎	Watch ▶️
3D Network	Read 🗎	Watch ▶️
Histogram	Read 🗎	Watch ▶️
Table	Read 🗎	Watch ▶️
Aggregation	Read 🗎	Watch ▶️
Bubbles	Read 🗎	Watch ▶️
Flow Diagram	Read 🗎	Watch ▶️
Scatterplot	Read 🗎
Waterfall	Read 🗎	Watch ▶️
Map	Read 🗎	Watch ▶️
Globe	Read 🗎
Gantt	Read 🗎	Watch ▶️
Timeline	Read 🗎
Heatmap	Read 🗎	Watch ▶️
Phylogenetic Tree	Read 🗎	Watch ▶️
Sequences	Read 🗎	Watch ▶️

More

• Watch Using MicrobeTrace - Adjusting genetic distance threshold settings
• Troubleshooting

Advanced

• Watch MicrobeTrace - Feedback and Support
• "Installation"
• Deployment
• Contributing