#2175: Add YAML as input as alternative to command-line arguments #2230

cwschilly · 2023-12-20T16:35:31Z

Usage

Pass a yaml config file with

--vt_input_config_yaml /path/to/yaml/file

The order of precedence is currently

command line arguments
input toml or ini file
input yaml,

meaning that the command line arguments will overwrite everything (and a toml config will overwrite a yaml config).

Changes to `yaml-cpp`

I had to make changes to the yaml-cpp library in order to avoid variable shadowing errors. I mostly used the solution from this PR, which added enum class where appropriate.

In one case, I had to change a variable name from YAML::Null to YAML::BaseNull (to avoid shadowing YAML::NodeType::Null). I don't foresee this having consequences for our development (if we want to check if some input is null, we would use YAML::NodeType::Null).

I also made yaml-cpp a system include directory to silence all warnings (-Wtautological-constant-compare was throwing an error on the intel icpx pipeline--this issue explains why it is not a meaningful warning and can be safely silenced).

github-actions · 2023-12-20T16:38:02Z

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remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhi%0D%0A%0D%0A%0D%0A ==> And there is more. Read log. <==

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/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&vt::vrt::collection::lb::GreedyLB::collectHandler, Target=vt::objgroup::proxy::ProxyElm<vt::vrt::collection::lb::GreedyLB>]"
          detected during:
            instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&vt::vrt::collection::lb::GreedyLB::collectHandler, Target=vt::objgroup::proxy::ProxyElm<vt::vrt::collection::lb::GreedyLB>]" 
/vt/src/vt/objgroup/proxy/proxy_objgroup.impl.h(221): here
            instantiation of "vt::objgroup::proxy::Proxy<ObjT>::PendingSendType vt::objgroup::proxy::Proxy<ObjT>::reduce<f,Op,Target,Args...>(Target, Args &&...) const [with ObjT=vt::vrt::collection::lb::GreedyLB, f=&vt::vrt::collection::lb::GreedyLB::collectHandler, Op=vt::collective::PlusOp, Target=vt::objgroup::proxy::ProxyElm<vt::vrt::collection::lb::GreedyLB>, Args=<vt::vrt::collection::lb::GreedyPayload>]" 
/vt/src/vt/vrt/collection/balance/greedylb/greedylb.cc(222): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]" 
/vt/examples/callback/callback.cc(147): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]" 
/vt/examples/callback/callback.cc(153): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]" 
/vt/examples/callback/callback.cc(147): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]" 
/vt/examples/callback/callback.cc(153%0D%0A%0D%0A%0D%0A ==> And there is more. Read log. <==

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PR tests (clang-13, alpine, mpich)

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PR tests (intel icpx, ubuntu, mpich)

Build for 1863492 (2024-04-18 23:12:29 UTC)

In file included from /vt/lib/yaml-cpp/src/convert.cpp:3:
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:103:7: warning: comparison with NaN always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  if (std::isnan(rhs)) {
      ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:212:1: note: in instantiation of function template specialization 'YAML::conversion::inner_encode<float>' requested here
YAML_DEFINE_CONVERT_STREAMABLE_SIGNED(float);
^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:194:3: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE_SIGNED'
  YAML_DEFINE_CONVERT_STREAMABLE(type, -)
  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:155:19: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE'
      conversion::inner_encode(rhs, stream);                               \n                  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:105:14: warning: comparison with infinity always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  } else if (std::isinf(rhs)) {
             ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:103:7: warning: comparison with NaN always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  if (std::isnan(rhs)) {
      ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:213:1: note: in instantiation of function template specialization 'YAML::conversion::inner_encode<double>' requested here
YAML_DEFINE_CONVERT_STREAMABLE_SIGNED(double);
^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:194:3: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE_SIGNED'
  YAML_DEFINE_CONVERT_STREAMABLE(type, -)
  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:155:19: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE'
      conversion::inner_encode(rhs, stream);                               \n                  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:105:14: warning: comparison with infinity always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  } else if (std::isinf(rhs)) {
             ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:103:7: warning: comparison with NaN always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  if (std::isnan(rhs)) {
      ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:214:1: note: in instantiation of function template specialization 'YAML::conversion::inner_encode<long double>' requested here
YAML_DEFINE_CONVERT_STREAMABLE_SIGNED(long double);
^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:194:3: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE_SIGNED'
  YAML_DEFINE_CON%0D%0A%0D%0A%0D%0A ==> And there is more. Read log. <==

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PR tests (nvidia cuda 12.2.0, gcc-9, ubuntu, mpich)

Build for 1863492 (2024-04-18 23:12:29 UTC)

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "double" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, double> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

Remark: The warnings can be suppressed with "-diag-suppress <warning-number>"

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "int" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, int> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

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Build for 531c3a8 (2024-07-17 20:10:33 UTC)

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "double" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, double> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

Remark: The warnings can be suppressed with "-diag-suppress <warning-number>"

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "int" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, int> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

/vt/tests/perf/send_cost.cc(169): warning #177-D: variable "prevNode" was declared but never referenced
    auto const prevNode = (thisNode - 1 + num_nodes_) % num_nodes_;
               ^

Remark: The warnings can be suppressed with "-diag-suppress <warning-number>"

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src/vt/configs/arguments/args.cc

cwschilly · 2023-12-20T21:21:56Z

I'm not sure what's going on with the PR checks (git --check) pipeline--there isn't any trailing white space in the file it's talking about

JacobDomagala · 2023-12-21T13:16:12Z

I think we should strip it down to bare minimum. We don't need test and contributing dirs. That would also resolve the trailing whitespace issue : )

Should we support using external yaml-cpp? Same way we intent to do with fmt (#2221)

cwschilly · 2023-12-21T15:18:35Z

Should we support using external yaml-cpp? Same way we intent to do with fmt (#2221)

I think this makes sense, especially since it seems the yaml-cpp source code doesn't pass the CI

JacobDomagala · 2023-12-22T11:55:10Z

Also, is the use of a yaml-based config file incentivized by something (like Empire already using that file type)? If not, maybe we should consider using JSON for the config file as well? We already have it set up, and its structure is well-known to everyone.

lifflander · 2024-01-02T22:08:38Z

Also, is the use of a yaml-based config file incentivized by something (like Empire already using that file type)? If not, maybe we should consider using JSON for the config file as well? We already have it set up, and its structure is well-known to everyone.

Yes, Empire is using YAML for their input and we want to be able to pass that directly to VT. LBAF and vt-tv are also using YAML so it seems that that route makes sense.

cwschilly · 2024-01-03T22:10:43Z

I've taken the approach of this PR (using enum classes) in order to resolve the clang warnings.

lib/yaml-cpp/include/yaml-cpp/null.h

lib/yaml-cpp/CMakeLists.txt

lifflander · 2024-04-30T22:56:00Z

@cwschilly Summary of our discussion:

Let's output the current configuration as a YAML file
Use this output for testing input is working properly
For the debug print configuration, take a list of components to output debug print statements
Create further nesting for inputs, like the "LB Data Output"/"Statistics"/"LB Data Input"

…test for reading input yaml

…ents

cwschilly self-assigned this Dec 20, 2023

cwschilly linked an issue Dec 20, 2023 that may be closed by this pull request

Add YAML as input as alternative to command-line arguments #2175

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cwschilly marked this pull request as draft December 20, 2023 16:35

cwschilly commented Dec 20, 2023

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cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch from 4a97f5c to e2714fc Compare December 20, 2023 19:07

cwschilly marked this pull request as ready for review December 20, 2023 21:20

cwschilly requested review from lifflander, thearusable, JacobDomagala, nlslatt, stmcgovern and ppebay December 20, 2023 21:20

cwschilly marked this pull request as draft December 21, 2023 17:01

cwschilly marked this pull request as ready for review January 3, 2024 22:12

cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch from 328fedf to 889748e Compare January 4, 2024 15:04

stmcgovern mentioned this pull request Jan 4, 2024

Update nvidia cuda version for CI #2235

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cwschilly commented Jan 4, 2024

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cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch 2 times, most recently from 0d5e7de to 18792a9 Compare January 5, 2024 13:43

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cwschilly requested a review from JacobDomagala April 30, 2024 16:42

lifflander and others added 28 commits July 17, 2024 16:10

#2175: args: change to camel case to follow style guidelines

f58e8e6

#2175: args: change names of YAML input parameters

50d0a6f

#2175: args: fix trace MPI

a4960d4

#2175: try ignoring nan warning

74c1f73

#2175: disable all warnings using SYSTEM

28dbb78

#2175: fix yaml input and improve hierarchy in input file

bd86662

#2175: fix yaml input; add ability to write config as yaml; add unit …

5f7e0f1

…test for reading input yaml

#2175: add test for writing out yaml

1f3cb3e

#2175: try cmake fix

5f93821

#2175: add CI print statements to debug

6dd274c

#2175: try fixing yamlcpp include

7bc9605

#2175: add more debug statements

222b935

#2175: add yamlcpp to trace_only_functions.cmake; remove print statem…

27cf8fd

…ents

#2175: improve user options

7e8931d

#2175: ensure compiler finds all yaml-cpp header files

0a14a27

#2175: fix failing test with lb disabled

5fa1aeb

#2175: install yamlcpp in include dir

a5edc1c

#2175: isolate yamlcpp include files

0e13f5c

#2175: make requested changes

76317cc

#2175: add back allKeywords to fix build error

a0c8144

#2175: fix codacy issue

c2bad05

#2175: store YAML labels in variables

78bc7fe

#2175: remove unneeded imports

1e27d80

#2175: simplify yaml output logic

a4afe5a

#2175: reorder precedence so args overwrite yaml

6a93709

#2175: move user args to args.cc and clean up

7e22e8c

#2175: fix indentation errors

ac2b86a

#2175: more improvements and fixes

531c3a8

cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch from 9c6dcbe to 531c3a8 Compare July 17, 2024 20:10

nlslatt merged commit 958e26c into develop Jul 18, 2024
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#2175: Add YAML as input as alternative to command-line arguments #2230

#2175: Add YAML as input as alternative to command-line arguments #2230

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#2175: Add YAML as input as alternative to command-line arguments #2230

#2175: Add YAML as input as alternative to command-line arguments #2230

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