Update task_nextclade.wdl

DOH-HNH0303 · Nov 7, 2023 · 9282492 · 9282492
1 parent 5877675
commit 9282492
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/tasks/taxon_id/task_nextclade.wdl b/tasks/taxon_id/task_nextclade.wdl
@@ -144,7 +144,7 @@ task nextclade_output_parser {
             nc_lineage = tsv_dict['lineage']
             if nc_lineage is None:
               nc_lineage = ""
-          elif 'lineage' in tsv_dict:
+          elif 'Nextclade_pango' in tsv_dict:
             nc_lineage = tsv_dict['Nextclade_pango']
             if nc_lineage is None:
               nc_lineage = ""