34 naming of variable recurrent cell type in ecnn

docs/source/tutorials/ECNN.ipynb

@@ -377,7 +377,7 @@
     "\n",
     "Before initializing the model, we set some parameters.\n",
     "The parameter ``n_state_neurons`` defines the number of the state neurons used in $s_t$.\n",
-    "As default we use  ``'elman'`` as ``recurrent_cell_type``, which builds an Elman RNN with error correction. However, there is a simpler form of GRU variant 3 (Dey and Salem, 2017) implemented. By setting ``recurrent_cell_type`` to ``'gru_3_variant'``, this is used. The ``lstm`` and ``gru`` cell is also supported.\n",
+    "As default we use  ``'elman'`` as ``cell_type``, which builds an Elman RNN with error correction. However, there is a simpler form of GRU variant 3 (Dey and Salem, 2017) implemented. By setting ``cell_type`` to ``'gru_3_variant'``, this is used. The ``lstm`` and ``gru`` cell is also supported.\n",
     "The ECNN knows two ``approaches``, ``backward`` and ``forward``. If approach is set to backward, U at time t is used in the model to predict Y at time t. If approach is set to forward, U at time t is used only to predict Y at time t+1. This way, you can implement your belief in there being a delay in the impact of U on Y.\n",
     "There is the possibility to set the initial state of the ECNN by giving a tensor of the right dimensions as ``init_state``. If none is provided, the hidden state is initialized randomly.\n",
     "We can decide whether that initial state is fixed or it should be learned as a trainable parameter. This is done by setting ``learn_init_state``.\n",
@@ -386,13 +386,13 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": null,
    "id": "alien-patent",
    "metadata": {},
    "outputs": [],
    "source": [
     "n_state_neurons = 4\n",
-    "recurrent_cell_type = 'elman'\n",
+    "cell_type = 'elman'\n",
     "approach = \"backward\"\n",
     "init_state = torch.zeros(1, n_state_neurons)\n",
     "learn_init_state = True\n",
@@ -403,7 +403,7 @@
     "    n_state_neurons=n_state_neurons,\n",
     "    past_horizon=past_horizon,\n",
     "    forecast_horizon=forecast_horizon,\n",
-    "    recurrent_cell_type=recurrent_cell_type,\n",
+    "    cell_type=cell_type,\n",
     "    approach=approach,\n",
     "    init_state=init_state,\n",
     "    learn_init_state=learn_init_state,\n",
@@ -680,7 +680,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": null,
    "id": "honey-mozambique",
    "metadata": {},
    "outputs": [],
@@ -691,7 +691,7 @@
     "    n_state_neurons=n_state_neurons,\n",
     "    past_horizon=past_horizon,\n",
     "    forecast_horizon=forecast_horizon,\n",
-    "    recurrent_cell_type='elman',\n",
+    "    cell_type='elman',\n",
     "    approach=\"backward\",\n",
     "    init_state=init_state,\n",
     "    learn_init_state=True,\n",

examples/case_study/models.py

@@ -24,15 +24,15 @@ def __init__(
         n_state_neurons: int,
         n_features_Y: int,
         forecast_horizon: int,
-        recurrent_cell_type: str,
+        cell_type: str,
     ):
         super(Benchmark_RNN, self).__init__()
         self.multivariate = False
 
         self.n_features_Y = n_features_Y
         self.forecast_horizon = forecast_horizon
         self.n_state_neurons = n_state_neurons
-        self.recurrent_cell_type = recurrent_cell_type
+        self.cell_type = cell_type
 
         self.cell = self.get_recurrent_cell()
         self.rnn = self.cell(input_size=n_features_U, hidden_size=n_state_neurons)
@@ -50,7 +50,7 @@ def forward(self, features_past: torch.Tensor) -> torch.Tensor:
 
     def set_init_state(self) -> Union[nn.Parameter, Tuple[nn.Parameter, nn.Parameter]]:
         dtype = torch.float64
-        if self.recurrent_cell_type == "lstm":
+        if self.cell_type == "lstm":
             init_state = (
                 nn.Parameter(
                     torch.rand(1, self.n_state_neurons, dtype=dtype), requires_grad=True
@@ -66,22 +66,22 @@ def set_init_state(self) -> Union[nn.Parameter, Tuple[nn.Parameter, nn.Parameter
         return init_state
 
     def get_recurrent_cell(self) -> nn.Module:
-        if self.recurrent_cell_type == "elman":
+        if self.cell_type == "elman":
             cell = nn.RNN
-        elif self.recurrent_cell_type == "gru":
+        elif self.cell_type == "gru":
             cell = nn.GRU
-        elif self.recurrent_cell_type == "lstm":
+        elif self.cell_type == "lstm":
             cell = nn.LSTM
         else:
             raise ValueError(
-                f"recurrent_cell_type {self.recurrent_cell_type} not available."
+                f"cell_type {self.cell_type} not available."
             )
         return cell
 
     def repeat_init_state(
         self, batchsize: int
     ) -> Union[torch.Tensor, Tuple[torch.Tensor, torch.Tensor]]:
-        if self.recurrent_cell_type == "lstm":
+        if self.cell_type == "lstm":
             return self.init_state[0].repeat(batchsize, 1).unsqueeze(
                 0
             ), self.init_state[1].repeat(batchsize, 1).unsqueeze(0)
@@ -117,7 +117,7 @@ def __init__(
         n_state_neurons: int,
         n_features_Y: int,
         forecast_horizon: int,
-        recurrent_cell_type: str,
+        cell_type: str,
     ):
         self.forecast_method = "direct"
         self.output_size_linear_decoder = n_features_Y * forecast_horizon
@@ -126,7 +126,7 @@ def __init__(
             n_state_neurons,
             n_features_Y,
             forecast_horizon,
-            recurrent_cell_type,
+            cell_type,
         )
 
     def forward(self, features_past: torch.Tensor) -> torch.Tensor:
@@ -161,7 +161,7 @@ def __init__(
         n_state_neurons: int,
         n_features_Y: int,
         forecast_horizon: int,
-        recurrent_cell_type: str,
+        cell_type: str,
     ):
         self.forecast_method = "recursive"
         self.output_size_linear_decoder = n_features_Y
@@ -170,7 +170,7 @@ def __init__(
             n_state_neurons,
             n_features_Y,
             forecast_horizon,
-            recurrent_cell_type,
+            cell_type,
         )
 
     def forward(self, features_past: torch.Tensor) -> torch.Tensor:
@@ -207,7 +207,7 @@ def __init__(
         n_state_neurons: int,
         n_features_Y: int,
         forecast_horizon: int,
-        recurrent_cell_type: str,
+        cell_type: str,
     ):
         self.forecast_method = "s2s"
         self.output_size_linear_decoder = n_features_Y
@@ -216,7 +216,7 @@ def __init__(
             n_state_neurons,
             n_features_Y,
             forecast_horizon,
-            recurrent_cell_type,
+            cell_type,
         )
         self.decoder = self.cell(input_size=n_features_U, hidden_size=n_state_neurons)
 
@@ -366,16 +366,16 @@ def init_models(
 
     # Compare to further Recurrent Neural Networks
     for forecast_module in [RNN_direct, RNN_recursive, RNN_S2S]:
-        for recurrent_cell_type in ["elman", "gru", "lstm"]:
+        for cell_type in ["elman", "gru", "lstm"]:
             model = forecast_module(
                 n_features_U,
                 n_state_neurons,
                 n_features_Y,
                 forecast_horizon,
-                recurrent_cell_type,
+                cell_type,
             )
             ensemble = init_ensemble(model, n_models)
-            benchmark_models[f"{recurrent_cell_type}_{model.forecast_method}"] = (
+            benchmark_models[f"{cell_type}_{model.forecast_method}"] = (
                 ensemble
             )
 

examples/ecnn_example.py

@@ -42,7 +42,7 @@
     n_state_neurons,
     past_horizon,
     forecast_horizon,
-    recurrent_cell_type="gru",
+    cell_type="gru",
     approach="backward",
     learn_init_state=True,
     n_features_Y=n_features_Y,

prosper_nn/models/ecnn/ecnn.py

@@ -67,7 +67,7 @@ def __init__(
         n_state_neurons: int,
         past_horizon: int,
         forecast_horizon: int = 1,
-        recurrent_cell_type: str = "elman",
+        cell_type: str = "elman",
         kwargs_recurrent_cell: dict = {},
         approach: str = "backward",
         learn_init_state: bool = True,
@@ -88,7 +88,7 @@ def __init__(
             prediction.
         forecast_horizon: int
             The forecast horizon.
-        recurrent_cell_type: str
+        cell_type: str
             Possible choices: elman, lstm, gru or gru_3_variant.
         kwargs_recurrent_cell: dict
             Parameters for the recurrent cell. Activation function can be set here.
@@ -124,24 +124,24 @@ def __init__(
         self.approach = approach
         self.future_U = future_U
         self.learn_init_state = learn_init_state
-        self.recurrent_cell_type = recurrent_cell_type
+        self.cell_type = cell_type
 
         self._check_variables()
 
-        if recurrent_cell_type == 'lstm':
+        if cell_type == 'lstm':
             self.state = ([(torch.tensor, torch.tensor)] * (past_horizon + forecast_horizon + 1))
         else:
             self.state = [torch.tensor] * (past_horizon + forecast_horizon + 1)
 
         self.ECNNCell = ecnn_cell.ECNNCell(
-                n_features_U, n_state_neurons, n_features_Y, recurrent_cell_type, kwargs_recurrent_cell
+                n_features_U, n_state_neurons, n_features_Y, cell_type, kwargs_recurrent_cell
             )
 
         self.init_state = self.set_init_state()
 
 
     def set_init_state(self):
-        if self.recurrent_cell_type == 'lstm':
+        if self.cell_type == 'lstm':
             init_state = (nn.Parameter(
                 torch.rand(1, self.n_state_neurons), requires_grad=self.learn_init_state
             ), nn.Parameter(
@@ -250,7 +250,7 @@ def forward(self, U: torch.Tensor, Y: torch.Tensor) -> torch.Tensor:
         return torch.cat((past_error, forecast), dim=0)
 
     def repeat_init_state(self, batchsize):
-        if self.recurrent_cell_type == 'lstm':
+        if self.cell_type == 'lstm':
             return self.init_state[0].repeat(batchsize, 1), self.init_state[1].repeat(batchsize, 1)
         else:
             return self.init_state.repeat(batchsize, 1)

prosper_nn/models/ecnn/ecnn_cell.py

@@ -43,7 +43,7 @@ def __init__(
         n_features_U: int,
         n_state_neurons: int,
         n_features_Y: int = 1,
-        recurrent_cell_type: str = "elman",
+        cell_type: str = "elman",
         kwargs_recurrent_cell: dict = {},
     ):
         """
@@ -58,7 +58,7 @@ def __init__(
         n_features_Y: int
             The number of outputs, i.e. the number of elements of Y at each time
             step. The default is 1.
-        recurrent_cell_type: str
+        cell_type: str
             Select the cell for the state transition. The cells elman, lstm, gru
             (all from pytorch) and gru_3_variant (from prosper_nn) are supported.
         kwargs_recurrent_cell: dict
@@ -73,17 +73,17 @@ def __init__(
 
         self.C = nn.Linear(n_state_neurons, n_features_Y, bias=False)
 
-        if recurrent_cell_type == "elman":
+        if cell_type == "elman":
             self.recurrent_cell = nn.RNNCell
-        elif recurrent_cell_type == "lstm":
+        elif cell_type == "lstm":
             self.recurrent_cell = nn.LSTMCell
-        elif recurrent_cell_type == "gru":
+        elif cell_type == "gru":
             self.recurrent_cell = nn.GRUCell
-        elif recurrent_cell_type == "gru_3_variant":
+        elif cell_type == "gru_3_variant":
             self.recurrent_cell = GRU_3_variant
         else:
             raise ValueError(
-                f"recurrent_cell_type: {recurrent_cell_type} is not known."
+                f"cell_type: {cell_type} is not known."
                 "Choose from elman, lstm, gru or gru_3_variant."
             )
         self.recurrent_cell = self.recurrent_cell(

setup.py

@@ -11,7 +11,7 @@
 
 setuptools.setup(
     name="prosper_nn",  # Replace with your own username
-    version="0.3.1",
+    version="0.3.2",
     author="Nico Beck, Julia Schemm",
     author_email="[email protected]",
     description="Package contains, in PyTorch implemented, neural networks with problem specific pre-structuring architectures and utils that help building and understanding models.",