2024-05-12 forecast submission #105
Workflow file for this run
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| name: Hub Submission Validation (R) | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: main | |
| paths: | |
| - 'model-output/**' | |
| - 'model-metadata/*' | |
| jobs: | |
| validate-submission: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev libv8-dev | |
| - name: Install HubValidations | |
| run: | | |
| install.packages("remotes") | |
| remotes::install_github("Infectious-Disease-Modeling-Hubs/hubValidations", upgrade = "always") | |
| shell: Rscript {0} | |
| - name: Run validations | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: | | |
| library("hubValidations") | |
| v <- hubValidations::validate_pr( | |
| gh_repo = Sys.getenv("GITHUB_REPOSITORY"), | |
| pr_number = Sys.getenv("PR_NUMBER"), | |
| skip_submit_window_check = FALSE | |
| ) | |
| hubValidations::check_for_errors(v) | |
| shell: Rscript {0} | |
| - name: Checkout and push to another repository | |
| if: success() | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: HopkinsIDD/rsv-forecast-hub_data | |
| token: ${{ secrets.KJ3_PATC }} | |
| path: ./rsv-forecast-hub_data | |
| fetch-depth: 2 | |
| - name: Copy new files | |
| run: | | |
| FILES=$(git diff --name-only HEAD^ HEAD) | |
| for FILE in $FILES | |
| do | |
| if [[ $FILE == model-output/* ]] || [[ $FILE == model-metadata/* ]]; then | |
| mkdir -p ./rsv-forecast-hub_data/$(dirname $FILE) | |
| cp $FILE ./rsv-forecast-hub_data/$FILE | |
| fi | |
| done | |
| - name: Commit and push new files | |
| run: | | |
| cd ./rsv-forecast-hub_data | |
| git config user.name "github-actions[bot]" | |
| git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| if [ -n "$(git status --porcelain)" ]; then | |
| git add . | |
| git commit -m "Upload new files to RSV data repo" | |
| git push | |
| echo "RSV data uploaded"; | |
| else | |
| echo "no upload"; | |
| fi | |
| shell: bash | |