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modified copy_rsv_data.yaml to correct to rsv-forecast-hub repo
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kjsato committed Jan 29, 2024
1 parent 67e60a3 commit e46ffba
Showing 1 changed file with 8 additions and 8 deletions.
16 changes: 8 additions & 8 deletions .github/workflows/copy_rsv_data.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -18,28 +18,28 @@ jobs:
fetch-depth: 1
path: ./rsv-forecast-hub_data
- name: Remove old rsvnet hospitalization data
run: rm ./rsv-forecast-hub_data/target-data/*_rsvnet_hospitalization.csv
run: rm ./rsv-forecast-hub/target-data/*_rsvnet_hospitalization.csv
- name: Copy files
run: |
mkdir -p ./rsv-forecast-hub_data/target-data/archive/
chmod +w ./rsv-forecast-hub_data/target-data/
mkdir -p ./rsv-forecast-hub/target-data/archive/
chmod +w ./rsv-forecast-hub/target-data/
FILES=$(curl -s https://api.github.com/repos/midas-network/rsv-scenario-modeling-hub/git/trees/main?recursive=1 | jq -r '.tree[] | select(.path | startswith("target-data/")) | .path')
for file in $FILES
do
FILENAME=$(basename $file)
if [[ $file == *_rsvnet_hospitalization.csv && $file != *archive* ]]; then
if [[ ! -f ./rsv-forecast-hub_data/target-data/$FILENAME ]]; then
curl -o ./rsv-forecast-hub_data/target-data/$FILENAME https://raw.githubusercontent.com/midas-network/rsv-scenario-modeling-hub/main/$file
if [[ ! -f ./rsv-forecast-hub/target-data/$FILENAME ]]; then
curl -o ./rsv-forecast-hub/target-data/$FILENAME https://raw.githubusercontent.com/midas-network/rsv-scenario-modeling-hub/main/$file
fi
elif [[ $file == *_rsvnet_hospitalization.csv && $file == *archive* ]]; then
if [[ ! -f ./rsv-forecast-hub_data/target-data/archive/$FILENAME ]]; then
curl -o ./rsv-forecast-hub_data/target-data/archive/$FILENAME https://raw.githubusercontent.com/midas-network/rsv-scenario-modeling-hub/main/$file
if [[ ! -f ./rsv-forecast-hub/target-data/archive/$FILENAME ]]; then
curl -o ./rsv-forecast-hub/target-data/archive/$FILENAME https://raw.githubusercontent.com/midas-network/rsv-scenario-modeling-hub/main/$file
fi
fi
done
- name: Commit and push repository update
run: |
cd ./rsv-forecast-hub_data
cd ./rsv-forecast-hub
git config user.name "github-actions[bot]"
git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
if [ -n "$(git status --porcelain)" ]; then
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