pyPESTO v0.5.4

• Breaking Changes
  • Remove Aesara support (#1453, #1455)
• General
  • CI improvements (#1436, #1437, #1438, #1439, #1440, #1443, #1473, #1484, #1486, #1490, #1485)
  • Update references/documentation (#1404, #1456, #1474, #1479, #1483, #1470, #1498)
• Profile
  • Improve Profiling Code (#1447)
• Visualize
  • allow log and/or linear scale for visualization (#1435)
  • More informative error message for start indices. (#1472)
• Optimization
  • SacessOptimizer: Fix acceptance threshold for objective improvement (#1457)
  • SacessOptimizer: expose more hyperparameters + minor fixes (#1459, #1476)
  • SacessOptimizer, ESSOptimizer: Bound-normalize parameters for proximity check (#1462)
  • ESSOptimizer: Fix bug in recombination and go-beyond (#1477, #1480)
• Objective
  • FD-objective correctly working with fixed parameters (#1446)
  • Petab Importer reforge (#1442, #1502)
  • Use cloudpickle for serializing NegLogParameterPriors (#1467)
  • Update PEtab.jl integration to match version 3.X (#1489)
• Sampling
  • Bayes Factor Tutorial (#1444)
• Ensemble
  • Added HPD calculation to ensemble (#1431)