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pyPESTO 0.0.13
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@yannikschaelte yannikschaelte released this 03 May 16:51
v0.0.13
f74b4d0
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Learn about vigilant mode.
  • Tidy up and speed up tests (#265 and others).
  • Basic self-implemented Adaptive Metropolis and Adaptive Parallel Tempering
    sampling routines (#268).
  • Fix namespace sample -> sampling (#275).
  • Fix covariance matrix regularization (#275).
  • Fix circular dependency PetabImporter - PetabAmiciObjective via
    AmiciObjectBuilder, PetabAmiciObjective becomes obsolete (#274).
  • Define AmiciCalculator to separate the AMICI call logic (required for
    hierarchical optimization) (#277).
  • Define initialize function for resetting steady states in AmiciObjective
    (#281).
  • Fix scipy least squares options (#283).
  • Allow failed starts by default (#280).
  • Always copy parameter vector in objective to avoid side effects (#291).
  • Add Dockerfile (#288).
  • Fix header names in CSV history (#299).

Documentation:

  • Use imported members in autodoc (#270).
  • Enable python syntax highlighting in notebooks (#271).
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