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Issues list

API methods to generate additional summary rows for Biosample table
#82 opened Jan 19, 2022 by realmarcin
provide NER output from SQLlite/basex tables
#81 opened Dec 15, 2021 by realmarcin
generate parquet file from SQLite/basex data
#80 opened Dec 15, 2021 by realmarcin
add Bioproject ids to Biosample records
#79 opened Dec 3, 2021 by realmarcin
decide on release artifacts
#78 opened Aug 26, 2021 by wdduncan
3
Can't find issue for reconciling curated NMDC ENVO subsets with INSDC ustilized terms
#66 opened Jul 6, 2021 by turbomam
2
use consistent case for ontology names
#64 opened Jul 6, 2021 by turbomam
repairing env_sample and mixs triad within biosample-analysis
#63 opened Jul 6, 2021 by turbomam
.gitignore additions in master
#59 opened Jun 18, 2021 by turbomam
2
expected fields errors when reading full biosample tsv with pandas
#52 opened May 27, 2021 by realmarcin
1
add additional biosample identifiers as columns
#51 opened May 19, 2021 by realmarcin
1
Build classifier using biosample training data
#38 opened Mar 8, 2021 by realmarcin
experimental factor
#35 opened Nov 11, 2020 by cmungall
Normalize unit representations
#32 opened Oct 7, 2020 by wdduncan
run NER/CR over all textual metadata fields
#31 opened Oct 5, 2020 by cmungall
@hrshdhgd
1
Expand TSV to include closures of ontology classes (primarily EnvO)
#30 opened Oct 2, 2020 by cmungall
normalize missing values
#26 opened Sep 29, 2020 by cmungall
2
normalize ENVO terms
#25 opened Sep 29, 2020 by cmungall
@hrshdhgd
11
normalize package names
#24 opened Sep 29, 2020 by cmungall
@wdduncan
4
explore TPOT package for more automated transform, feature and model selection
#20 opened Sep 25, 2020 by realmarcin
identify key set of quantitative fields to predict environment terms
#17 opened Sep 23, 2020 by realmarcin
Validate harmonized attributes using MIxS patterns
#8 opened Sep 17, 2020 by cmungall
@wdduncan
Translate to KGX edges format and use embiggen to embed and perform link prediction
#5 opened Sep 1, 2020 by cmungall
@wdduncan
Are all fields at the Study level inherited by Samples?
#3 opened Sep 1, 2020 by realmarcin
@wdduncan
fetch study metadata
#1 opened Aug 12, 2020 by cmungall
@hrshdhgd
6
ProTip! no:milestone will show everything without a milestone.