ISA tools Configuration Files

These pre-defined configurations files, created using the ISAcreator configurator tool, are uploaded in the ISAcreator to customizes the fields displayed by this editor tool. The configurations provided here are designed to meet the requirements of one or more minimum information checklist(s), specifying the required fields, and/or enabling values to be drawn from a set of ontology terms.

The 'ISA-default-configuration' is designed to fit several types of assays (where one or more different measurements and technologies are used). Contact us if you need a new configuration that fit your specific needs, e.g. a different fields, or checklist, or set of ontologies/controlled vocabularies.

CONFIGURATION FILE	MEASUREMENT TYPES	TECHNOLOGY TYPES	CREATOR/GROUP	CHECKLIST(S)
ISA-default-configuration-v2011-02-18	transcription profiling	nucleotide sequencing	ISA Team	MIAME, MINSEQE, MIAPE(core), MIGS, CIMR(core), MIFlowCyt
	protein-DNA binding site identification	nucleotide sequencing
	transcription factor binding site identification	nucleotide sequencing
	DNA methylation profiling	nucleotide sequencing
	histone modification profiling	nucleotide sequencing
	genome sequencing	nucleotide sequencing
	metagenome sequencing	nucleotide sequencing
	environmental gene survey	nucleotide sequencing
	DNA methylation profiling	DNA microarray
	protein-DNA binding site identification	DNA microarray
	transcription factor binding site identification	DNA microarray
	transcription profiling	DNA microarray
	copy number variation profiling	DNA microarray
	SNP analysis	DNA microarray
	protein identification	mass spectrometry
	metabolite profiling	mass spectrometry
	protein expression profiling	protein microarray
	protein expression profiling	gel electrophoresis
	metabolite profiling	NMR spectroscopy
	cell sorting	flow cytometry
	cell counting	flow cytometry
	clinical chemistry analysis	n/a
	hematology	n/a
	histology	n/a
ISA-MIMARK-water-v2011-02-18-default-configuration-v2011-02-18	all above	all above	ISA Team and GSC compliance working group	MIMARK-water
ISA-MIMARK-soil-v2011-02-18-default-configuration-v2011-02-18	all above	all above	ISA Team and GSC compliance working group	MIMARK-soil