code cleanup #3
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| name: Check WDL Workflow | |
| on: [push, pull_request] | |
| jobs: | |
| validate-wdl: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Java | |
| uses: actions/setup-java@v2 | |
| with: | |
| distribution: 'adopt' | |
| java-version: '11' | |
| - name: Install Cromwell | |
| run: | | |
| wget https://github.com/broadinstitute/cromwell/releases/download/87/womtool-87.jar -O womtool.jar | |
| - name: Validate WDL with Cromwell | |
| run: | | |
| java -jar womtool.jar validate workflows/wf_c-bird.wdl | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Install MiniWDL | |
| run: | | |
| pip install miniwdl | |
| - name: Validate WDL with MiniWDL | |
| run: | | |
| miniwdl check workflows/wf_c-bird.wdl |