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31 Open 121 Closed
31 Open 121 Closed
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Issues list

IsLabelledNewick="true" or "false" ?
#172 opened Nov 22, 2024 by walterxie
3
Add CMD option to generate a specified group of tree operators enhancement New feature or request
#171 opened Nov 21, 2024 by walterxie
1
set upper boundary manually for RealParameter for now
#169 opened Nov 19, 2024 by EvaLiyt
add calibrations to CalibratedYuleToBeast enhancement New feature or request
#168 opened Nov 5, 2024 by EvaLiyt
Should not create new Taxon in LPhyBeast bug Something isn't working
#167 opened Nov 4, 2024 by walterxie
1
BactrianRandomWalkOperator should use "windowSize" enhancement New feature or request
#165 opened Oct 22, 2024 by walterxie
XML is incorrect if data clamping not in the sink of graphical model critical change the bug fix or new feature will significant change the code enhancement New feature or request
#164 opened Oct 22, 2024 by zjzxiaohei
1
summary function affects likelihood XML enhancement New feature or request
#163 opened Oct 14, 2024 by walterxie
Prepare release 1.2.1
#159 opened Oct 3, 2024 by walterxie
implement CalibratedYuleToBeast enhancement New feature or request
#144 opened Jul 10, 2024 by EvaLiyt
Refactor LPhyBeastConfig enhancement New feature or request
#138 opened Apr 17, 2024 by walterxie
Starting value and tree problems for ASM package critical change the bug fix or new feature will significant change the code enhancement New feature or request
#134 opened Feb 29, 2024 by walterxie
use getAsRealParameter not getBEASTObject bug Something isn't working
#133 opened Feb 20, 2024 by walterxie
Migrate to BEAST 2.7 operators critical change the bug fix or new feature will significant change the code enhancement New feature or request
#128 opened Jan 17, 2024 by walterxie
2
Github action has a problem again and again ...
#123 opened Nov 23, 2023 by walterxie
Handle the strange implementation of BDSS ignoring tree operator enhancement New feature or request
#121 opened Sep 22, 2023 by walterxie
2
set up pathsampling enhancement New feature or request
#115 opened Aug 16, 2023 by walterxie
1
Picocil cannot take names containing spaces bug Something isn't working
#107 opened Apr 4, 2023 by walterxie
Alignment editor enhancement New feature or request
#103 opened Feb 15, 2023 by walterxie
specify the right size for SubtreeSlide enhancement New feature or request
#93 opened Oct 12, 2022 by walterxie
2
LPhyBEAST wraps the execution of BEAST enhancement New feature or request
#92 opened Oct 2, 2022 by walterxie
Compress constants sites from the original alignment enhancement New feature or request
#89 opened Sep 28, 2022 by walterxie
1
general approach to convert a unicode string to an ascii string for variable names enhancement New feature or request
#88 opened Aug 16, 2022 by walterxie
1
Convert 1-line lphy script into correct XML enhancement New feature or request
#80 opened Jul 19, 2022 by walterxie
Extension mechanism for IIDToBEAST enhancement New feature or request
#76 opened Jul 13, 2022 by walterxie
ProTip! Updated in the last three days: updated:>2025-01-01.